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BaseInfo

ncRNA ID	novel_zma_miR12887
Species	Zea mays
Class	miRNA
Genome position	Chr2:204249530-204249644 [+]
Reference genome	RefGen_v4
Source	SRR5451003;SRR5451005
Length	24
Mature sequence(if miRNA)	92 - GUUUGGUUGCAAUGAUAGGACGGG - 115
Stem-loop(if miRNA)	CUU       ---UG    -   GG        UUUUGCUGAAAU        C     -   G      CUGUUUU     UGCG CCA  GACGUAUA            GAUACUAC AUAGC UUU CGU    |||||||     |||| |||  ||||||||            |||||||| ||||| ||| ||G    GGCAGGA     ACGU GGU  UUGCGUGU            UUGUGGUG UAUCG GGA GCC --G       UAGUA    U   --        ----------CU        -     U   G
Stem-loop sequence	CUUCUGUUUUUGUGCGCCAGGGACGUAUAUUUUGCUGAAAUGAUACUACCAUAGCUUUGCGUGCCGGAGGUGCUAUGUGGUGUUUCUGUGCGUUUGGUUGCAAUGAUAGGACGGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI405809.1	ncRNA:24   GGGCAGGAUAGUAACGUUGGUUUG   1   ||||||||=||||||||||||||| targets:152   CCCGUCCUGUCAUUGCAACCAAAC   175 Target Full Sequence	1.0	Sequence 3934 from Patent EP2074227	NA	coding protein	psRNATarget
JB166270.1	ncRNA:24   GGGCAGGAUAGUAACGUUGGUUUG   1   ||||||||=||||||||||||||| targets:152   CCCGUCCUGUCAUUGCAACCAAAC   175 Target Full Sequence	1.0	Sequence 3934 from Patent EP2559767	NA	coding protein	psRNATarget
LQ237939.1	ncRNA:24   GGGCAGGAUAGUAACGUUGGUUUG   1   ||||||||=||||||||||||||| targets:152   CCCGUCCUGUCAUUGCAACCAAAC   175 Target Full Sequence	1.0	Sequence 3934 from Patent EP2985353	NA	coding protein	psRNATarget
EU947942.1	ncRNA:24   GGGCAGGAUAGUAACGUUGGUUUG   1   ||=|||||=||||||||||||||| targets:242   CCUGUCCUGUCAUUGCAACCAAAC   265 Target Full Sequence	1.0	Zea mays clone 366958 mRNA sequence	NA	coding protein	psRNATarget
XM_020552549.1	ncRNA:24   GGGCAGGAUAGUAACGUUGGUUUG   1   ||||||||=||||||=|||||||| targets:907   CCCGUCCUGUCAUUGUAACCAAAC   930 Target Full Sequence	2.5	PREDICTED: Zea mays dentin sialophosphoprotein-related (LOC103653323), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020552546.1	ncRNA:24   GGGCAGGAUAGUAACGUUGGUUUG   1   ||||||||=||||||=|||||||| targets:907   CCCGUCCUGUCAUUGUAACCAAAC   930 Target Full Sequence	2.5	PREDICTED: Zea mays dentin sialophosphoprotein-related (LOC103653323), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020545693.1	ncRNA:24   GGGCAGGAUAGUAACGUUGGUUUG   1   |==||||*=||||||||||||||| targets:3628   CUUGUCCCGUCAUUGCAACCAAAC   3651 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103641151 (LOC103641151), mRNA	NA	coding protein	psRNATarget
EZ084566.1	ncRNA:24   GGGCAGGAUAGUAACGUUGGUUUG   1   |=*||||||||||||*|||||||| targets:43   CUAGUCCUAUCAUUGGAACCAAAC   66 Target Full Sequence	1.5	TSA: Zea mays contig20210, mRNA sequence	NA	coding protein	psRNATarget
XM_008652671.2	ncRNA:24   GGGCAGGAUAGUAACGUUGGUUUG   1   |||*||||||=|||||||||||*| targets:932   CCCAUCCUAUUAUUGCAACCAAUC   955 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100193379), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008652672.2	ncRNA:24   GGGCAGGAUAGUAACGUUGGUUUG   1   |||*||||||=|||||||||||*| targets:827   CCCAUCCUAUUAUUGCAACCAAUC   850 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100193379), transcript variant X2, mRNA	NA	coding protein	psRNATarget