ncRNA ID | novel_zma_miR12880 |
Species | Zea mays |
Class | miRNA |
Genome position | Chr2:236375932-236376124 [+] |
Reference genome | RefGen_v4 |
Source | SRR1997866 |
Length | 24 |
Mature sequence(if miRNA) | 170 - AGGACAGGAGCUAAAUUUUAGCGG - 193 |
Stem-loop(if miRNA) |
--             -  GG   AC   A  C      C    -AAAUA  A    A    A   ACCCAACCAACU    ------U   UUCGUCUCGUCUUUUA   GCUAAAGUUUAGC CC  GUC  AUC AA GUUUGA UUUU      GG GUAU AAAU UAG            GGAC       AGA                A   ||||||||||||| ||  |||  ||| || |||||| ||||      || |||| |||| |||            ||||       |||                U   CGAUUUUAAAUCG GG  CAG  UAG UU CAAACU AGAG      CC CAUA UUUA AUC            AGCC       UUG                C GG             A  -A   GA   C  A      U    GCAAGG  -    A    C   ------------    UAAUAUU   AUUAAACAGUCGGCUU |
Stem-loop sequence | GCUAAAGUUUAGCCCGGGUCACAUCAAACGUUUGACUUUUAAAUAGGAGUAUAAAAUAUAGACCCAACCAACUGGACUAGAUUCGUCUCGUCUUUUAAUCUUCGGCUGACAAAUUAGUUUUAUAAUCCGACUACAUUUAAUACCCGGAACGGAGAUUCAAACAUUCGAUAGGACAGGAGCUAAAUUUUAGCGG |