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BaseInfo

ncRNA ID novel_zma_miR12880
Species Zea mays
Class miRNA
Genome position Chr2:236375932-236376124 [+]
Reference genome RefGen_v4
Source SRR1997866
Length 24
Mature sequence(if miRNA) 170 - AGGACAGGAGCUAAAUUUUAGCGG - 193
Stem-loop(if miRNA) --             -  GG   AC   A  C      C    -AAAUA  A    A    A   ACCCAACCAACU    ------U   UUCGUCUCGUCUUUUA
  GCUAAAGUUUAGC CC  GUC  AUC AA GUUUGA UUUU      GG GUAU AAAU UAG            GGAC       AGA                A
  ||||||||||||| ||  |||  ||| || |||||| ||||      || |||| |||| |||            ||||       |||                U
  CGAUUUUAAAUCG GG  CAG  UAG UU CAAACU AGAG      CC CAUA UUUA AUC            AGCC       UUG                C
GG             A  -A   GA   C  A      U    GCAAGG  -    A    C   ------------    UAAUAUU   AUUAAACAGUCGGCUU
Stem-loop sequence GCUAAAGUUUAGCCCGGGUCACAUCAAACGUUUGACUUUUAAAUAGGAGUAUAAAAUAUAGACCCAACCAACUGGACUAGAUUCGUCUCGUCUUUUAAUCUUCGGCUGACAAAUUAGUUUUAUAAUCCGACUACAUUUAAUACCCGGAACGGAGAUUCAAACAUUCGAUAGGACAGGAGCUAAAUUUUAGCGG