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BaseInfo

ncRNA ID	novel_zma_miR12874
Species	Zea mays
Class	miRNA
Genome position	Chr1:21857522-21857616 [-]
Reference genome	RefGen_v4
Source	SRR5451003
Length	21
Mature sequence(if miRNA)	75 - GGUGGAUUGAGGAGGAUUGGA - 95
Stem-loop(if miRNA)	--  U     -    A      -    U          AUC       AG   GG GGAUU GAGG GGAUUG GAGG GAUUAAAUCU   CCUAUUC  U   || ||||| |||| |||||| |||| ||||||||||   |||||||   CC CCUAA CUCC CCUAAC CUCC CUAAUUUAGG   GGAUAAG  U GU  -     U    -      U    -          GAA       UU
Stem-loop sequence	GGUGGAUUGAGGAGGAUUGGAGGUGAUUAAAUCUAUCCCUAUUCAGUUUUGAAUAGGAAGGGAUUUAAUCCCUCUCAAUCCCCUCUAAUCCCCUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020552749.1	ncRNA:21   AGGUUAGGAGGAGUUAGGUGG   1   ||||||||*|||||||||||| targets:3278   UCCAAUCCCCCUCAAUCCACC   3298 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103654236 (LOC103654236), mRNA	NA	coding protein	psRNATarget
BT067503.1	ncRNA:21   AGGUUAGGAGGAGUUAGGUGG   1   ||||||||*|||||||||||| targets:1599   UCCAAUCCCCCUCAAUCCACC   1619 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0066C23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176181.1	ncRNA:21   AGGUUAGGAGGAGUUAGGUGG   1   ||||||||*|||||||||||| targets:1599   UCCAAUCCCCCUCAAUCCACC   1619 Target Full Sequence	1.5	Zea mays uncharacterized LOC100383533 (LOC100383533), mRNA	NA	coding protein	psRNATarget
JB166364.1	ncRNA:21   AGGUUAGGAGGAGUUAGGUGG   1   |||||||||*||||||||||* targets:81   UCCAAUCCUGCUCAAUCCACA   101 Target Full Sequence	2.5	Sequence 4028 from Patent EP2559767	NA	coding protein	psRNATarget
HI405903.1	ncRNA:21   AGGUUAGGAGGAGUUAGGUGG   1   |||||||||*||||||||||* targets:81   UCCAAUCCUGCUCAAUCCACA   101 Target Full Sequence	2.5	Sequence 4028 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238033.1	ncRNA:21   AGGUUAGGAGGAGUUAGGUGG   1   |||||||||*||||||||||* targets:81   UCCAAUCCUGCUCAAUCCACA   101 Target Full Sequence	2.5	Sequence 4028 from Patent EP2985353	NA	coding protein	psRNATarget
BT017648.1	ncRNA:21   AGGUUAGGAGGAGUUAGGUGG   1   *=||||==||||||||||||| targets:217   CUCAAUUUUCCUCAAUCCACC   237 Target Full Sequence	2.0	Zea mays clone EL01N0439D04.c mRNA sequence	NA	coding protein	psRNATarget
EU942657.1	ncRNA:21   AGGUUAGGAGGAGUUAGGUGG   1   |||||||||*||||||||||* targets:237   UCCAAUCCUACUCAAUCCACA   257 Target Full Sequence	2.5	Zea mays clone 1527578 mRNA sequence	NA	coding protein	psRNATarget
AY103719.1	ncRNA:21   AGGUUAGGAGGAGUUAGGUGG   1   |||||||||*||||||||||* targets:880   UCCAAUCCUGCUCAAUCCACA   900 Target Full Sequence	2.5	Zea mays PCO137008 mRNA sequence	NA	coding protein	psRNATarget
EU949831.1	ncRNA:21   AGGUUAGGAGGAGUUAGGUGG   1   |||||||||*||||||||||* targets:1015   UCCAAUCCUACUCAAUCCACA   1035 Target Full Sequence	2.5	Zea mays clone 447574 mRNA sequence	NA	coding protein	psRNATarget
XM_008666493.2	ncRNA:21   AGGUUAGGAGGAGUUAGGUGG   1   |||||||||*||||||||||* targets:3482   UCCAAUCCUACUCAAUCCACA   3502 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020546709.1	ncRNA:21   AGGUUAGGAGGAGUUAGGUGG   1   |||||||||*||||||||||* targets:3468   UCCAAUCCUACUCAAUCCACA   3488 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008666491.2	ncRNA:21   AGGUUAGGAGGAGUUAGGUGG   1   |||||||||*||||||||||* targets:3750   UCCAAUCCUACUCAAUCCACA   3770 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008666492.2	ncRNA:21   AGGUUAGGAGGAGUUAGGUGG   1   |||||||||*||||||||||* targets:3755   UCCAAUCCUACUCAAUCCACA   3775 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X2, mRNA	NA	coding protein	psRNATarget
LQ240954.1	ncRNA:21   AGGUUAGGAGGAGUUAGGUGG   1   *=|||||||||||||||||=* targets:80   CUCAAUCCUCCUCAAUCCAUA   100 Target Full Sequence	2.5	Sequence 6949 from Patent EP2985353	NA	coding protein	psRNATarget
HI408824.1	ncRNA:21   AGGUUAGGAGGAGUUAGGUGG   1   *=|||||||||||||||||=* targets:80   CUCAAUCCUCCUCAAUCCAUA   100 Target Full Sequence	2.5	Sequence 6949 from Patent EP2074227	NA	coding protein	psRNATarget
JB169285.1	ncRNA:21   AGGUUAGGAGGAGUUAGGUGG   1   *=|||||||||||||||||=* targets:80   CUCAAUCCUCCUCAAUCCAUA   100 Target Full Sequence	2.5	Sequence 6949 from Patent EP2559767	NA	coding protein	psRNATarget