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BaseInfo

ncRNA ID novel_zma_miR12869
Species Zea mays
Class miRNA
Genome position Chr10:143576921-143577039 [+]
Reference genome RefGen_v4
Source SRR5451003;SRR5451005
Length 24
Mature sequence(if miRNA) 96 - AAUGGAAUAAAAAGUAGGGACUAA - 119
Stem-loop(if miRNA) --       U A                 -   U      UC    U             
  AGUCCCU C UUUUAUUCUAUUUUAGU CUA AAAUUG  AAAU UAGAAACUAAAAUA
  ||||||| | ||||||||||||||||| ||| ||||||  |||| |||||||||||||G
  UCAGGGA G AAAAUAAGGUAAAAUCA GGU UUUAAC  UUUA AUCUUUGAUUUUGA
AA       U A                 A   -      GA    U             
Stem-loop sequence AGUCCCUUCAUUUUAUUCUAUUUUAGUCUAUAAAUUGUCAAAUUUAGAAACUAAAAUAGAGUUUUAGUUUCUAUAUUUAGCAAUUUUGGAACUAAAAUGGAAUAAAAAGUAGGGACUAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ235087.1
ncRNA:24   AAUCAGGGAUG-AAAAAUAAGGUAA   1
  |||||||||||-|||||||||||||
targets:29   UUAGUCCCUACAUUUUUAUUCCAUU   53

3.0 Sequence 1082 from Patent EP2985353 NA coding protein psRNATarget
HI402957.1
ncRNA:24   AAUCAGGGAUG-AAAAAUAAGGUAA   1
  |||||||||||-|||||||||||||
targets:29   UUAGUCCCUACAUUUUUAUUCCAUU   53

3.0 Sequence 1082 from Patent EP2074227 NA coding protein psRNATarget
JB163418.1
ncRNA:24   AAUCAGGGAUG-AAAAAUAAGGUAA   1
  |||||||||||-|||||||||||||
targets:29   UUAGUCCCUACAUUUUUAUUCCAUU   53

3.0 Sequence 1082 from Patent EP2559767 NA coding protein psRNATarget
XM_020542840.1
ncRNA:24   AAUCAGGGAUGAAAAAUAAGGUAA   1
  |||||||||||*||||||||||||
targets:997   UUAGUCCCUACAUUUUAUUCCAUU   1020

1.5 PREDICTED: Zea mays hypothetical protein (LOC103636172), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001139183.1
ncRNA:24   AAUCAGGGAUGAAAAAUAAGGUAA   1
  ||||||=||||*||||||||||||
targets:840   UUAGUCUCUACAUUUUAUUCCAUU   863

2.5 Zea mays hypothetical protein (LOC100194130), mRNA NA coding protein psRNATarget
BT036582.1
ncRNA:24   AAUCAGGGAUGAAAAAUAAGGUAA   1
  ||||||=||||*||||||||||||
targets:840   UUAGUCUCUACAUUUUAUUCCAUU   863

2.5 Zea mays full-length cDNA clone ZM_BFb0124H18 mRNA, complete cds NA coding protein psRNATarget
XM_020553397.1
ncRNA:24   AAUCAGGGAUGAAAAAUAAGGUAA   1
  |||||=|||||*||||||||||||
targets:577   UUAGUUCCUACAUUUUAUUCCAUU   600

2.5 PREDICTED: Zea mays SANT/MYB protein (LOC100284980), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020550478.1
ncRNA:24   AAUCAGGGAUGAAAAAUAAGGUAA   1
  |||||||||*|*||||||||||||
targets:2648   UUAGUCCCUUCAUUUUAUUCCAUU   2671

2.5 PREDICTED: Zea mays uncharacterized LOC103651221 (LOC103651221), mRNA NA coding protein psRNATarget
BT063047.1
ncRNA:24   AAUCAGGGAUGAAAAAUAAGGUAA   1
  |||||||||*|*||||||||||||
targets:2097   UUAGUCCCUUCAUUUUAUUCCAUU   2120

2.5 Zea mays full-length cDNA clone ZM_BFc0019F15 mRNA, complete cds NA coding protein psRNATarget
NM_001174830.1
ncRNA:24   AAUCAGGGAUGAAAAAUAAGGUAA   1
  |||||||||*|*||||||||||||
targets:2097   UUAGUCCCUUCAUUUUAUUCCAUU   2120

2.5 Zea mays Tubulin binding cofactor C domain-containing protein (LOC100382067), mRNA NA coding protein psRNATarget
BT019141.1
ncRNA:24   AAUCAGGGAUGAAAAAUAAGGUAA   1
  |||||||||*|*||||||||||||
targets:292   UUAGUCCCUCCAUUUUAUUCCAUU   315

2.5 Zea mays clone Contig786.F mRNA sequence NA coding protein psRNATarget
EZ052166.1
ncRNA:24   AAUCAGGGAUGAAAAAUAAGGUAA   1
  ||||||||||**||||||||||||
targets:777   UUAGUCCCUAGAUUUUAUUCCAUU   800

2.5 TSA: Zea mays contig53286, mRNA sequence NA coding protein psRNATarget
LQ238843.1
ncRNA:24   AAUCAGGGAUGAAAAAUAAGGUAA   1
  |||||||||*|*||||||||||||
targets:167   UUAGUCCCUCCAUUUUAUUCCAUU   190

2.5 Sequence 4838 from Patent EP2985353 NA coding protein psRNATarget
HI406713.1
ncRNA:24   AAUCAGGGAUGAAAAAUAAGGUAA   1
  |||||||||*|*||||||||||||
targets:167   UUAGUCCCUCCAUUUUAUUCCAUU   190

2.5 Sequence 4838 from Patent EP2074227 NA coding protein psRNATarget
JB167174.1
ncRNA:24   AAUCAGGGAUGAAAAAUAAGGUAA   1
  |||||||||*|*||||||||||||
targets:167   UUAGUCCCUCCAUUUUAUUCCAUU   190

2.5 Sequence 4838 from Patent EP2559767 NA coding protein psRNATarget
HI403052.1
ncRNA:24   AAUCAGGGAUGAAAAAUAAGGUAA   1
  |||||||||*|*||||||||||||
targets:27   UUAGUCCCUUCAUUUUAUUCCAUU   50

2.5 Sequence 1177 from Patent EP2074227 NA coding protein psRNATarget
JB163513.1
ncRNA:24   AAUCAGGGAUGAAAAAUAAGGUAA   1
  |||||||||*|*||||||||||||
targets:27   UUAGUCCCUUCAUUUUAUUCCAUU   50

2.5 Sequence 1177 from Patent EP2559767 NA coding protein psRNATarget
LQ235182.1
ncRNA:24   AAUCAGGGAUGAAAAAUAAGGUAA   1
  |||||||||*|*||||||||||||
targets:27   UUAGUCCCUUCAUUUUAUUCCAUU   50

2.5 Sequence 1177 from Patent EP2985353 NA coding protein psRNATarget
JB166880.1
ncRNA:24   AAUCAGGGAUGAAAAAUAAGGUAA   1
  |||||||||*|*||||||||||||
targets:76   UUAGUCCCUCCAUUUUAUUCCAUU   99

2.5 Sequence 4544 from Patent EP2559767 NA coding protein psRNATarget
HI406419.1
ncRNA:24   AAUCAGGGAUGAAAAAUAAGGUAA   1
  |||||||||*|*||||||||||||
targets:76   UUAGUCCCUCCAUUUUAUUCCAUU   99

2.5 Sequence 4544 from Patent EP2074227 NA coding protein psRNATarget
LQ238549.1
ncRNA:24   AAUCAGGGAUGAAAAAUAAGGUAA   1
  |||||||||*|*||||||||||||
targets:76   UUAGUCCCUCCAUUUUAUUCCAUU   99

2.5 Sequence 4544 from Patent EP2985353 NA coding protein psRNATarget
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