Search result

BaseInfo

ncRNA ID	osa-miRf10883-npr
Species	Oryza sativa
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	23
Mature sequence(if miRNA)	NA - CUGGUUGGUGUUACCAACCGAGA - NA
Stem-loop(if miRNA)	AG  C      A  U                 UAU AUCUUU  UC CGGUUG UG UACCAAUCGGGAUUAAA   C ||||||  || |||||| || ||||||||||||||||| UAGAAA  AG GCCAAC AU GUGGUUGGUCCUGAUUU   A       AA  A      C  U                 CUA
Stem-loop sequence	AUCUUUAGUCCCGGUUGAUGUUACCAAUCGGGAUUAAAUAUCAAUCUUUAGUCCUGGUUGGUGUUACCAACCGAGAAAAAAGAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015779829.1	ncRNA:23   AGAGCCAACCAUUGUGGUUGGUC   1   ||*|||||||||||||||||||| targets:1709   UCCCGGUUGGUAACACCAACCAG   1731 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4335182 (LOC4335182), mRNA	uncharacterized LOC4335182(LOC4335182)	coding protein	psRNATarget
AK242216.1	ncRNA:23   AGAGCCAACCAUUGUGGUUGGUC   1   ||*||||||||||||||||||=| targets:667   UCCCGGUUGGUAACACCAACCGG   689 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J075172F09, full insert sequence	NA	coding protein	psRNATarget
AK289098.1	ncRNA:23   AGAGCCAACCAUUGUGGUUGGUC   1   ||*||||||||||||||||||=| targets:247   UCCCGGUUGGUAACACCAACCGG   269 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090096E23, full insert sequence	NA	coding protein	psRNATarget
AK288224.1	ncRNA:23   AGAGCCAACCAUUGUGGUUGGUC   1   ||*||||||||||||||||||=| targets:1852   UCCCGGUUGGUAACACCAACCGG   1874 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090012B15, full insert sequence	NA	coding protein	psRNATarget
AK288624.1	ncRNA:23   AGAGCCAACCAUUGUGGUUGGUC   1   ||*=||||||||||||||||||| targets:5005   UCCUGGUUGGUAACACCAACCAG   5027 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090054H14, full insert sequence	NA	coding protein	psRNATarget
AK288734.1	ncRNA:23   AGAGCCAACCAUUGUGGUUGGUC   1   ||*||||||||||||||||||=| targets:56   UCCCGGUUGGUAACACCAACCGG   78 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090063I24, full insert sequence	NA	coding protein	psRNATarget
AK119354.1	ncRNA:23   AGAGCCAACCAUUGUGGUUGGUC   1   ||*=|||||||||||||||||=| targets:74   UCCUGGUUGGUAACACCAACCGG   96 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:001-131-F10, full insert sequence	NA	coding protein	psRNATarget
XM_015792800.1	ncRNA:23   AGAGCCAACCAUUGUGGUUGGUC   1   ||*=|||||||||||||||||=| targets:683   UCCUGGUUGGUAACACCAACCGG   705 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4346359 (LOC4346359), transcript variant X3, mRNA	uncharacterized LOC4346359(LOC4346359)	coding protein	psRNATarget
AK121472.1	ncRNA:23   AGAGCCAACCAUUGUGGUUGGUC   1   ||-||||||||||||||||||=| targets:2070   UC-CGGUUGGUAACACCAACCGG   2091 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023148H10, full insert sequence	NA	coding protein	psRNATarget
AK288438.1	ncRNA:23   AGA-------GCCAACCAUUGUGGUUGGUC   1   |||-------||||||||||||||||||=| targets:1313   UCUUUAGCCCCGGUUGGUAACACCAACCGG   1342 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090034C21, full insert sequence	NA	coding protein	psRNATarget
XM_015758676.1	ncRNA:23   AGAGCCAACCAUUGUGGUUGGUC   1   *|||||||*||||||||||||=| targets:1987   CCUCGGUUAGUAACACCAACCGG   2009 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group polyubiquitin-like (LOC107279205), mRNA	polyubiquitin-like(LOC107279205)	coding protein	psRNATarget
AK121178.1	ncRNA:23   AGAGCCAACCAUUGUGGUUGGUC   1   ||*=|||||||||||||||||*| targets:1944   UCCUGGUUGGUAACACCAACCCG   1966 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023083G22, full insert sequence	NA	coding protein	psRNATarget
AK066662.1	ncRNA:23   AGAGCCAACCAUUGUGGUUGGUC   1   ||*|||||*|||*|||||||||| targets:664   UCCCGGUUCGUAUCACCAACCAG   686 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013071A17, full insert sequence	NA	coding protein	psRNATarget