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BaseInfo

ncRNA ID	novel_zma_miR12855
Species	Zea mays
Class	miRNA
Genome position	Chr1:197347468-197347627 [-]
Reference genome	RefGen_v4
Source	SRR5451003
Length	24
Mature sequence(if miRNA)	1 - AAACAUUCUGAUUUGCAGCCGGCU - 24
Stem-loop(if miRNA)	--                   C         C         AA                 --ACA   CCACC G     GU   CCGGCUGCAAAUCAGAAUG UUGCAGCCC UCACAAAAA  GAGGAUAGACCCCACCU     GGU     A AUAAC  U   ||||||||||||||||||| ||||||||| |||||||||  |||||||||||||||||     |||     | |||||   GGCCGACGUUUAGUCUUAC AACGUUGGG AGUGUUUUU  UUCCUAUCUGGGGUGGG     UCG     U UGUUG  U UC                   A         A         -C                 GAUCG   -UUAU G     AU
Stem-loop sequence	CCGGCUGCAAAUCAGAAUGCUUGCAGCCCCUCACAAAAAAAGAGGAUAGACCCCACCUACAGGUCCACCAGAUAACGUUUUAGUUGUGUUAUUGCUGCUAGGGGUGGGGUCUAUCCUUCUUUUUGUGAAGGGUUGCAAACAUUCUGAUUUGCAGCCGGCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT033928.1	ncRNA:24   UCGGCCGACGUUUAGUCUUACAAA   1   ||||*||||||||*|||||||||| targets:2059   AGCCCGCUGCAAAACAGAAUGUUU   2082 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0036M23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137162.1	ncRNA:24   UCGGCCGACGUUUAGUCUUACAAA   1   ||||*||||||||*|||||||||| targets:2059   AGCCCGCUGCAAAACAGAAUGUUU   2082 Target Full Sequence	1.5	Zea mays uncharacterized LOC100191734 (LOC100191734), mRNA	NA	coding protein	psRNATarget
XM_008682759.2	ncRNA:24   UCGGCCGACGUUUAGUCUUACAAA   1   ||||*||||||||*|||||||||| targets:2497   AGCCCGCUGCAAAACAGAAUGUUU   2520 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100191734 (LOC100191734), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008682758.2	ncRNA:24   UCGGCCGACGUUUAGUCUUACAAA   1   ||||*||||||||*|||||||||| targets:2500   AGCCCGCUGCAAAACAGAAUGUUU   2523 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100191734 (LOC100191734), transcript variant X1, mRNA	NA	coding protein	psRNATarget