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BaseInfo

ncRNA ID novel_zma_miR12854
Species Zea mays
Class miRNA
Genome position Chr1:219165492-219165570 [-]
Reference genome RefGen_v4
Source SRR5451003;SRR2089699
Length 24
Mature sequence(if miRNA) 56 - UUCGGUUAGGAGUGGAUUGAGGGG - 79
Stem-loop(if miRNA) --       AG                   G    A   
  UUCGGUU  GAGUGGAUUGAGGGGGAAU GAGG GAUU
  |||||||  ||||||||||||||||||| |||| |||A
  AAGCUAA  UUCACCUAACUCCCCUUUA CUCC CUAA
AC       AU                   A    C   
Stem-loop sequence UUCGGUUAGGAGUGGAUUGAGGGGGAAUGGAGGAGAUUAAAUCCCCUCAAUUUCCCCUCAAUCCACUUUAAAUCGAACA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020552749.1
ncRNA:24   GGGGAGUUAGGUGAGGAUUGGCUU   1
  |||||||||||||*||||||||||
targets:3285   CCCCUCAAUCCACCCCUAACCGAA   3308

1.5 PREDICTED: Zea mays uncharacterized LOC103654236 (LOC103654236), mRNA NA coding protein psRNATarget
XM_008661613.2
ncRNA:24   GGGGAGUUAGGUGAGGAUUGGCUU   1
  ||=||||||||||*||||||||||
targets:3053   CCUCUCAAUCCACCCCUAACCGAA   3076

1.5 PREDICTED: Zea mays two-component response regulator ORR25 (LOC103638799), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008661611.2
ncRNA:24   GGGGAGUUAGGUGAGGAUUGGCUU   1
  ||=||||||||||*||||||||||
targets:3058   CCUCUCAAUCCACCCCUAACCGAA   3081

1.5 PREDICTED: Zea mays two-component response regulator ORR25 (LOC103638799), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008674377.2
ncRNA:24   GGGGAGUUAGGUGAGGAUUGGCUU   1
  =||=||||||=||||||||=||||
targets:3096   UCCUUCAAUCUACUCCUAAUCGAA   3119

2.5 PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008674376.2
ncRNA:24   GGGGAGUUAGGUGAGGAUUGGCUU   1
  =||=||||||=||||||||=||||
targets:3109   UCCUUCAAUCUACUCCUAAUCGAA   3132

2.5 PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008674375.2
ncRNA:24   GGGGAGUUAGGUGAGGAUUGGCUU   1
  =||=||||||=||||||||=||||
targets:3140   UCCUUCAAUCUACUCCUAAUCGAA   3163

2.5 PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X1, mRNA NA coding protein psRNATarget
EU942133.1
ncRNA:24   GGGGAGUUAGGUGAGGAUUGGCUU   1
  |=|=|||||||||*||||||||||
targets:205   CUCUUCAAUCCACACCUAACCGAA   228

1.5 Zea mays clone 1476690 mRNA sequence NA coding protein psRNATarget
EU941788.1
ncRNA:24   GGGGAGUUAGGUGAGGAUUGGCUU   1
  |=|=|||||||||*||||||||||
targets:195   CUCUUCAAUCCACACCUAACCGAA   218

1.5 Zea mays clone 1470119 mRNA sequence NA coding protein psRNATarget
BT017648.1
ncRNA:24   GGGGAGUUAGGUGAGGAUUGGCUU   1
  ==|||||||||||*||||||||||
targets:224   UUCCUCAAUCCACCCCUAACCGAA   247

1.5 Zea mays clone EL01N0439D04.c mRNA sequence NA coding protein psRNATarget
BT054119.1
ncRNA:24   GGGGAGUUAGGUGAGGAUUGGCUU   1
  =|==||=|||||||=|||||||||
targets:455   UCUUUCGAUCCACUUCUAACCGAA   478

2.5 Zea mays full-length cDNA clone ZM_BFb0117A22 mRNA, complete cds NA coding protein psRNATarget
BT064784.1
ncRNA:24   GGGGAG-UUAGGUGAGGAUUGGCUU   1
  =|||||-|||||||||||||||||*
targets:862   UCCCUCCAAUCCACUCCUAACCGAC   886

3.0 Zea mays full-length cDNA clone ZM_BFb0132E20 mRNA, complete cds NA coding protein psRNATarget
EZ107077.1
ncRNA:24   GGGGAGUUAGGUGAGGAUUGGCUU   1
  |===|||||||||*||||||||||
targets:135   CUUUUCAAUCCACACCUAACCGAA   158

1.5 TSA: Zea mays contig42735, mRNA sequence NA coding protein psRNATarget
BT055357.1
ncRNA:24   GGGGAGUUAGGUGAGGAUUGGCUU   1
  |===|||||||||*||||||||||
targets:420   CUUUUCAAUCCACGCCUAACCGAA   443

1.5 Zea mays full-length cDNA clone ZM_BFb0070A22 mRNA, complete cds NA coding protein psRNATarget
AY103783.2
ncRNA:24   GGGGAGUUAGGUGAGGAUUGGCUU   1
  |===|||||||||*||||||||||
targets:780   CUUUUCAAUCCACGCCUAACCGAA   803

1.5 Zea mays PCO084580 mRNA sequence NA coding protein psRNATarget
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