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BaseInfo

ncRNA ID novel_zma_miR12838
Species Zea mays
Class miRNA
Genome position Chr10:8783898-8783951 [+]
Reference genome RefGen_v4
Source SRR5451003
Length 24
Mature sequence(if miRNA) 31 - GGGCUUCGUGCCGGGCUCGCGGAC - 54
Stem-loop(if miRNA) -CG  U         -  CG     AA
   UG CGGGCUCGG AC  GGCCC  A
   || ||||||||| ||  |||||  C
   GC GCUCGGGCC UG  UCGGG  A
CAG  -         G  CU     CG
Stem-loop sequence CGUGUCGGGCUCGGACCGGGCCCAAACAGCGGGCUUCGUGCCGGGCUCGCGGAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008671112.2
ncRNA:24   CAGGCGCUCGGGCCGUGCUUCGGG   1
  **=|||||||||||||||||||||
targets:1067   ACUCGCGAGCCCGGCACGAAGCCC   1090

0.0 PREDICTED: Zea mays uncharacterized LOC103646381 (LOC103646381), mRNA NA coding protein psRNATarget
XM_020545884.1
ncRNA:24   CAGGCGCUCGGGCCGUGCUUCGGG   1
  |*||||||||||||||||||||*|
targets:2746   GCCCGCGAGCCCGGCACGAAGCAC   2769

1.5 PREDICTED: Zea mays E3 ubiquitin-protein ligase PUB23 (LOC103642284), mRNA NA coding protein psRNATarget