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BaseInfo

ncRNA ID	novel_zma_miR12833
Species	Zea mays
Class	miRNA
Genome position	Chr9:40541386-40541496 [+]
Reference genome	RefGen_v4
Source	SRR5451003
Length	24
Mature sequence(if miRNA)	88 - AUCGGAUUGGAUACAGAGAUGCUA - 111
Stem-loop(if miRNA)	--A    -   AG   UG -       UG  U  UUA     AGAA     AUCGUGA    CGUC CUG  AUU  A CCGGUUU  GA UU   GUCGG    AGCGA       U    |||| |||  |||  | |||||||  || ||   |||||    |||||       A    GUAG GAC  UAG  U GGCUAAA  UU AG   UAGCC    UUGCU       U AUC    A   -A   GU A       GU  U  UUG     ---G     AAAAAUA
Stem-loop sequence	ACGUCCUGAGAUUUGACCGGUUUUGGAUUUUUAGUCGGAGAAAGCGAAUCGUGAUAUAUAAAAAUCGUUGCCGAUGUUGAUUUUGAAAUCGGAUUGGAUACAGAGAUGCUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008677675.2	ncRNA:24   AUCGUAGAGACAUAGGUUAGGCUA   1   ||*=|||||*|||||||||||||| targets:131   UAAUAUCUCGGUAUCCAAUCCGAU   154 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103652016 (LOC103652016), mRNA	NA	coding protein	psRNATarget
BT042968.1	ncRNA:24   AUCG-------UAGAGACAUAGGUUAGGCUA   1   |=||-------||||||||||||=||||||* targets:791   UGGCGGGCGUAAUCUCUGUAUCCGAUCCGAC   821 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0071M07 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148772.1	ncRNA:24   AUCG-------UAGAGACAUAGGUUAGGCUA   1   |=||-------||||||||||||=||||||* targets:791   UGGCGGGCGUAAUCUCUGUAUCCGAUCCGAC   821 Target Full Sequence	2.5	Zea mays Putative ATP dependent copper transporter (LOC100274413), mRNA	NA	coding protein	psRNATarget
XM_008669389.2	ncRNA:24   AUCG-------UAGAGACAUAGGUUAGGCUA   1   |=||-------||||||||||||=||||||* targets:2647   UGGCGGGCGUAAUCUCUGUAUCCGAUCCGAC   2677 Target Full Sequence	2.5	PREDICTED: Zea mays Putative ATP dependent copper transporter (LOC100274413), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008669390.2	ncRNA:24   AUCG-------UAGAGACAUAGGUUAGGCUA   1   |=||-------||||||||||||=||||||* targets:2671   UGGCGGGCGUAAUCUCUGUAUCCGAUCCGAC   2701 Target Full Sequence	2.5	PREDICTED: Zea mays Putative ATP dependent copper transporter (LOC100274413), transcript variant X2, mRNA	NA	coding protein	psRNATarget