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BaseInfo

ncRNA ID	novel_zma_miR12827
Species	Zea mays
Class	miRNA
Genome position	Chr10:142048702-142048833 [-]
Reference genome	RefGen_v4
Source	SRR1997866
Length	24
Mature sequence(if miRNA)	109 - AGGGCUUGUUUGGAAUCAAAGGUA - 132
Stem-loop(if miRNA)	--               U      -        U           A   G   C CC     C   A   AGGGCUUGUUUGGAA CAAAGG UAAUGGAG GGAUUGAGGGG CUA AAU C  UGCUA UUA U   ||||||||||||||| |||||| |||||||| ||||||||||| ||| ||| |  ||||| |||   UCCCGAACAGACCUU GUUUCC AUUACCUC CCUAACUCCCC GAU UUA G  GUGAU AGU U AA               -      C        C           C   A   A UA     A   U
Stem-loop sequence	AGGGCUUGUUUGGAAUCAAAGGUAAUGGAGUGGAUUGAGGGGACUAGAAUCCCCUGCUACUUAAUUUUGAAUAGUGAUGAAUUAUAGCCCCCUCAAUCCCCUCCAUUACCCUUUGUUCCAGACAAGCCCUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008654031.2	ncRNA:24   AUGGAAACUAAGGUUUGUUCGGGA   1   |||=*|||*||||||||||||||| targets:1694   UACUCUUGCUUCCAAACAAGCCCU   1717 Target Full Sequence	1.0	PREDICTED: Zea mays peroxidase 2 (LOC103632211), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001150586.2	ncRNA:21   GAAACUAAGGUUUGUUCGGGA   1   |||||||*||||||||||||| targets:1   CUUUGAUCCCAAACAAGCCCU   21 Target Full Sequence	1.0	Zea mays uncharacterized LOC100276883 (LOC100276883), mRNA	NA	coding protein	psRNATarget
EZ079574.1	ncRNA:24   AUGGAAACUAAGGUUUGUUCGGGA   1   |||-||||*|||||||=||||||| targets:35   UAC-UUUGUUUCCAAAUAAGCCCU   57 Target Full Sequence	2.5	TSA: Zea mays contig15213, mRNA sequence	NA	coding protein	psRNATarget
EU968858.1	ncRNA:24   AUGGAAACUAAGGUUUGUUCGGGA   1   |||||||**|*||||||||||||| targets:1166   UACCUUUACUCCCAAACAAGCCCU   1189 Target Full Sequence	3.0	Zea mays clone 324588 mRNA sequence	NA	coding protein	psRNATarget
AY104107.2	ncRNA:24   AUGGAAACUAAGGUUUGUUCGGGA   1   |||||||**|*||||||||||||| targets:1307   UACCUUUACUCCCAAACAAGCCCU   1330 Target Full Sequence	3.0	Zea mays PCO062189 mRNA sequence	NA	coding protein	psRNATarget
BT033702.1	ncRNA:24   AUGGAAACUAAGGUUUGUUCGGGA   1   |||||||**|*||||||||||||| targets:1059   UACCUUUACUCCCAAACAAGCCCU   1082 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0115E06 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137008.1	ncRNA:24   AUGGAAACUAAGGUUUGUUCGGGA   1   |||||||**|*||||||||||||| targets:1059   UACCUUUACUCCCAAACAAGCCCU   1082 Target Full Sequence	3.0	Zea mays calcineurin B-like protein (CBL1), mRNA	NA	coding protein	psRNATarget
JB166403.1	ncRNA:24   AUGGAAACUAAGGUUUGUUCGGGA   1   |||||||**|*||||||||||||| targets:107   UACCUUUACUCCCAAACAAGCCCU   130 Target Full Sequence	3.0	Sequence 4067 from Patent EP2559767	NA	coding protein	psRNATarget
JB166411.1	ncRNA:24   AUGGAAACUAAGGUUUGUUCGGGA   1   |||||||**|*||||||||||||| targets:107   UACCUUUACUCCCAAACAAGCCCU   130 Target Full Sequence	3.0	Sequence 4075 from Patent EP2559767	NA	coding protein	psRNATarget
HI405942.1	ncRNA:24   AUGGAAACUAAGGUUUGUUCGGGA   1   |||||||**|*||||||||||||| targets:107   UACCUUUACUCCCAAACAAGCCCU   130 Target Full Sequence	3.0	Sequence 4067 from Patent EP2074227	NA	coding protein	psRNATarget
HI405950.1	ncRNA:24   AUGGAAACUAAGGUUUGUUCGGGA   1   |||||||**|*||||||||||||| targets:107   UACCUUUACUCCCAAACAAGCCCU   130 Target Full Sequence	3.0	Sequence 4075 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238072.1	ncRNA:24   AUGGAAACUAAGGUUUGUUCGGGA   1   |||||||**|*||||||||||||| targets:107   UACCUUUACUCCCAAACAAGCCCU   130 Target Full Sequence	3.0	Sequence 4067 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238080.1	ncRNA:24   AUGGAAACUAAGGUUUGUUCGGGA   1   |||||||**|*||||||||||||| targets:107   UACCUUUACUCCCAAACAAGCCCU   130 Target Full Sequence	3.0	Sequence 4075 from Patent EP2985353	NA	coding protein	psRNATarget
AY111470.1	ncRNA:24   AUGGAAACUAAGGUUUGUUCGGGA   1   ||=|*||**||||||||||||||| targets:744   UAUCCUUACUUCCAAACAAGCCCU   767 Target Full Sequence	2.0	Zea mays CL18010_1 mRNA sequence	NA	coding protein	psRNATarget
BT016976.1	ncRNA:24   AUGGAAACUAAGGUUUGUUCGGGA   1   ||=|*||**||||||||||||||| targets:174   UAUCCUUACUUCCAAACAAGCCCU   197 Target Full Sequence	2.0	Zea mays clone EK07D2303A11.c mRNA sequence	NA	coding protein	psRNATarget
EU942791.1	ncRNA:24   AUGGAAACUAAGGUUUGUUCGGGA   1   **|=||||*||||||||*|||||| targets:517   CUCUUUUGCUUCCAAACUAGCCCU   540 Target Full Sequence	2.5	Zea mays clone 1536943 mRNA sequence	NA	coding protein	psRNATarget