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BaseInfo

ncRNA ID	novel_zma_miR12818
Species	Zea mays
Class	miRNA
Genome position	Chr9:131692699-131692817 [-]
Reference genome	RefGen_v4
Source	SRR5451003
Length	24
Mature sequence(if miRNA)	1 - AAUGGAAUAAAGUAGAGGGACUAA - 24
Stem-loop(if miRNA)	--        C                  C C      AC       A          C   AGUCCCUC AUUUUAUUCCAUUUUAGU C UAAAUU  UAAAUAU GAAACUAAAA U   |||||||| |||||||||||||||||| | ||||||  ||||||| |||||||||| C   UCAGGGAG UGAAAUAAGGUAAAAUUA G AUUUAA  AUUUAUA CUUUGAUUUU U AA        A                  A U      CA       C          A
Stem-loop sequence	AGUCCCUCCAUUUUAUUCCAUUUUAGUCCCUAAAUUACUAAAUAUAGAAACUAAAACUCUAUUUUAGUUUCCAUAUUUAACAAUUUAUGAAUUAAAAUGGAAUAAAGUAGAGGGACUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT019141.1	ncRNA:24   AAUCAGGGAGAUGAAAUAAGGUAA   1   ||||||||||*|=||||||||||| targets:292   UUAGUCCCUCCAUUUUAUUCCAUU   315 Target Full Sequence	2.5	Zea mays clone Contig786.F mRNA sequence	NA	coding protein	psRNATarget
EU967664.1	ncRNA:24   AAUCAGGGAGAUGAAAUAAGGUAA   1   ||||||=|||*||||||||||||| targets:1124   UUAGUCUCUCCACUUUAUUCCAUU   1147 Target Full Sequence	2.0	Zea mays clone 305169 NADH-cytochrome b5 reductase mRNA, complete cds	NA	coding protein	psRNATarget
NM_001112602.2	ncRNA:24   AAUCAGGGAGAUGAAAUAAGGUAA   1   ||||||=|||*||||||||||||| targets:1124   UUAGUCUCUCCACUUUAUUCCAUU   1147 Target Full Sequence	2.0	Zea mays ferric-chelate reductase (NADH)2 (fcr2), mRNA	NA	coding protein	psRNATarget
JB167174.1	ncRNA:24   AAUCAGGGAGAUGAAAUAAGGUAA   1   ||||||||||*|=||||||||||| targets:167   UUAGUCCCUCCAUUUUAUUCCAUU   190 Target Full Sequence	2.5	Sequence 4838 from Patent EP2559767	NA	coding protein	psRNATarget
HI406713.1	ncRNA:24   AAUCAGGGAGAUGAAAUAAGGUAA   1   ||||||||||*|=||||||||||| targets:167   UUAGUCCCUCCAUUUUAUUCCAUU   190 Target Full Sequence	2.5	Sequence 4838 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238843.1	ncRNA:24   AAUCAGGGAGAUGAAAUAAGGUAA   1   ||||||||||*|=||||||||||| targets:167   UUAGUCCCUCCAUUUUAUUCCAUU   190 Target Full Sequence	2.5	Sequence 4838 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238549.1	ncRNA:24   AAUCAGGGAGAUGAAAUAAGGUAA   1   ||||||||||*|=||||||||||| targets:76   UUAGUCCCUCCAUUUUAUUCCAUU   99 Target Full Sequence	2.5	Sequence 4544 from Patent EP2985353	NA	coding protein	psRNATarget
HI406419.1	ncRNA:24   AAUCAGGGAGAUGAAAUAAGGUAA   1   ||||||||||*|=||||||||||| targets:76   UUAGUCCCUCCAUUUUAUUCCAUU   99 Target Full Sequence	2.5	Sequence 4544 from Patent EP2074227	NA	coding protein	psRNATarget
JB166880.1	ncRNA:24   AAUCAGGGAGAUGAAAUAAGGUAA   1   ||||||||||*|=||||||||||| targets:76   UUAGUCCCUCCAUUUUAUUCCAUU   99 Target Full Sequence	2.5	Sequence 4544 from Patent EP2559767	NA	coding protein	psRNATarget
EU945607.1	ncRNA:24   AAUCAGGGAGAUGAAAUAAGGUAA   1   ||||||||||*|*||||||||||| targets:141   UUAGUCCCUCCAAUUUAUUCCAUU   164 Target Full Sequence	2.5	Zea mays clone 279279 mRNA sequence	NA	coding protein	psRNATarget
HI402994.1	ncRNA:24   AAUCAGGGAGAUGAAAUAAGGUAA   1   |||||||||**||||||||||||| targets:27   UUAGUCCCUACACUUUAUUCCAUU   50 Target Full Sequence	2.0	Sequence 1119 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235124.1	ncRNA:24   AAUCAGGGAGAUGAAAUAAGGUAA   1   |||||||||**||||||||||||| targets:27   UUAGUCCCUACACUUUAUUCCAUU   50 Target Full Sequence	2.0	Sequence 1119 from Patent EP2985353	NA	coding protein	psRNATarget
JB163455.1	ncRNA:24   AAUCAGGGAGAUGAAAUAAGGUAA   1   |||||||||**||||||||||||| targets:27   UUAGUCCCUACACUUUAUUCCAUU   50 Target Full Sequence	2.0	Sequence 1119 from Patent EP2559767	NA	coding protein	psRNATarget