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BaseInfo

ncRNA ID	novel_zma_miR12816
Species	Zea mays
Class	miRNA
Genome position	Chr9:140916689-140916771 [-]
Reference genome	RefGen_v4
Source	SRR5451003
Length	24
Mature sequence(if miRNA)	1 - AUGGAAAUCUCUUGGGAAAACGGU - 24
Stem-loop(if miRNA)	--                 -   A               AUG   CGUUUUCCCAAGGGAUU CCA UUUUCCCAAGGGAAA   A   ||||||||||||||||| ||| |||||||||||||||   A   GCAAAAGGGUUCUCUAA GGU AAAAGGGUUCCCUUU   C UG                 A   -               AAU
Stem-loop sequence	CGUUUUCCCAAGGGAUUCCAAUUUUCCCAAGGGAAAAUGAACUAAUUUCCCUUGGGAAAAUGGAAAUCUCUUGGGAAAACGGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020552563.1	ncRNA:24   UGGCAAAAGGGUUCUCUAAAGGUA   1   *||*||||||||||=||||||||| targets:377   CCCAUUUUCCCAAGGGAUUUCCAU   400 Target Full Sequence	1.5	PREDICTED: Zea mays probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10 (LOC103653427), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008647761.2	ncRNA:24   UGGC--AAAAGGGUUCUCUAAAGGUA   1   |||*--||||==|||||||||||||| targets:703   ACCCAUUUUUUUCAAGAGAUUUCCAU   728 Target Full Sequence	2.0	PREDICTED: Zea mays E3 ubiquitin-protein ligase RMA1H1 (LOC103627470), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008647760.2	ncRNA:24   UGGC--AAAAGGGUUCUCUAAAGGUA   1   |||*--||||==|||||||||||||| targets:703   ACCCAUUUUUUUCAAGAGAUUUCCAU   728 Target Full Sequence	2.0	PREDICTED: Zea mays E3 ubiquitin-protein ligase RMA1H1 (LOC103627470), transcript variant X2, mRNA	NA	coding protein	psRNATarget
AF023159.1	ncRNA:24   UGGCAAAAGGGUUCUCUAAAGGUA   1   *|=*||||=||||||||||||*|| targets:5501   UCUAUUUUUCCAAGAGAUUUCAAU   5524 Target Full Sequence	2.5	Zea mays starch synthase DULL1 (dull1) mRNA, complete cds	NA	coding protein	psRNATarget
EZ070838.1	ncRNA:24   UGGCAAAAGGGUUCUCUAAAGGUA   1   **=*|||||=||||*||||||||| targets:76   CAUAUUUUCUCAAGUGAUUUCCAU   99 Target Full Sequence	2.5	TSA: Zea mays contig06475, mRNA sequence	NA	coding protein	psRNATarget
NM_001350811.1	ncRNA:24   UGGCAAAAGGGUUCUCUAAAGGUA   1   *==*||||||*||||||||||=|| targets:2481   UUUAUUUUCCGAAGAGAUUUCUAU   2504 Target Full Sequence	2.5	Zea mays uncharacterized LOC100278071 (LOC100278071), mRNA	NA	coding protein	psRNATarget
XM_020541935.1	ncRNA:24   UGGCAAAAGGGUUCUCUAAAGGUA   1   =|*|*||||=|*|||||||||||| targets:20   GCGGCUUUCUCUAGAGAUUUCCAU   43 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100217103 (LOC100217103), transcript variant X1, mRNA	NA	coding protein	psRNATarget