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BaseInfo

ncRNA ID	novel_zma_miR12815
Species	Zea mays
Class	miRNA
Genome position	Chr9:147762979-147763029 [-]
Reference genome	RefGen_v4
Source	SRR5451003
Length	24
Mature sequence(if miRNA)	28 - CCAUAGGCUGUGGCGUCGAGGUAA - 51
Stem-loop(if miRNA)	--                    G A   CCAUAGGCUGUGGCGUCGAG U A   |||||||||||||||||||| | C   GGUAUCCGACACCGCGGCUC A A GC                    G C
Stem-loop sequence	CCAUAGGCUGUGGCGUCGAGGUAACACAGCUCGGCGCCACAGCCUAUGGCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008649330.2	ncRNA:24   AAUGGAGCUGCGGUGUCGGAUACC   1   ||||||||=||||||||||||||| targets:5   UUACCUCGGCGCCACAGCCUAUGG   28 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100273460 (LOC100273460), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008649328.2	ncRNA:24   AAUGGAGCUGCGGUGUCGGAUACC   1   ||||||||=||||||||||||||| targets:3   UUACCUCGGCGCCACAGCCUAUGG   26 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100273460 (LOC100273460), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI405915.1	ncRNA:24   AAUGGAGCUGCGGUGUCGGAUACC   1   ||||||||=||||||||=|||||| targets:93   UUACCUCGGCGCCACAGUCUAUGG   116 Target Full Sequence	2.5	Sequence 4040 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238045.1	ncRNA:24   AAUGGAGCUGCGGUGUCGGAUACC   1   ||||||||=||||||||=|||||| targets:93   UUACCUCGGCGCCACAGUCUAUGG   116 Target Full Sequence	2.5	Sequence 4040 from Patent EP2985353	NA	coding protein	psRNATarget
JB166376.1	ncRNA:24   AAUGGAGCUGCGGUGUCGGAUACC   1   ||||||||=||||||||=|||||| targets:93   UUACCUCGGCGCCACAGUCUAUGG   116 Target Full Sequence	2.5	Sequence 4040 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008666663.2	ncRNA:24   AAUGGAGCUGCGGUGUCGGAUACC   1   *|||||||=|||||=||||||||| targets:862   GUACCUCGGCGCCAUAGCCUAUGG   885 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103643463), mRNA	NA	coding protein	psRNATarget
XM_020541199.1	ncRNA:24   AAUGGAGCUGCGGUGUCGGAUACC   1   **||||||=|||||=||||||||| targets:1302   GCACCUCGGCGCCAUAGCCUAUGG   1325 Target Full Sequence	2.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020541198.1	ncRNA:24   AAUGGAGCUGCGGUGUCGGAUACC   1   **||||||=|||||=||||||||| targets:1300   GCACCUCGGCGCCAUAGCCUAUGG   1323 Target Full Sequence	2.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008655193.2	ncRNA:24   AAUGGAGCUGCGGUGUCGGAUACC   1   **||||||=|||||=||||||||| targets:1359   GCACCUCGGCGCCAUAGCCUAUGG   1382 Target Full Sequence	2.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008655192.2	ncRNA:24   AAUGGAGCUGCGGUGUCGGAUACC   1   **||||||=|||||=||||||||| targets:1359   GCACCUCGGCGCCAUAGCCUAUGG   1382 Target Full Sequence	2.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020551648.1	ncRNA:24   AAUGGAGCUGCGGUGUCGGAUACC   1   ||=*||||||||||||*||||||* targets:136   UUGGCUCGACGCCACAACCUAUGA   159 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382520 (LOC100382520), transcript variant X1, mRNA	NA	coding protein	psRNATarget