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BaseInfo

ncRNA ID	novel_zma_miR12805
Species	Zea mays
Class	miRNA
Genome position	Chr9:110175422-110175508 [+]
Reference genome	RefGen_v4
Source	SRR5451003
Length	24
Mature sequence(if miRNA)	64 - CAGUGGCACACAAGGAACGAGUAU - 87
Stem-loop(if miRNA)	--    A                 A  GG     -AA      U   ACUC UUCCUUGUGUGCCACUG GU  UAUAU   GUAUAU U   |||| ||||||||||||||||| ||  |||||   |||||| U   UGAG AAGGAACACACGGUGAC CG  GUGUA   UAUGUG U UA    C                 -  GG     CGG      U
Stem-loop sequence	ACUCAUUCCUUGUGUGCCACUGAGUGGUAUAUAAGUAUAUUUUUUGUGUAUGGCAUGUGGGGCCAGUGGCACACAAGGAACGAGUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT040698.1	ncRNA:24   UAUGAGCAAGGAACACACGGUGAC   1   |||||||||||||||||||||||| targets:636   AUACUCGUUCCUUGUGUGCCACUG   659 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0119B19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147730.1	ncRNA:24   UAUGAGCAAGGAACACACGGUGAC   1   |||||||||||||||||||||||| targets:636   AUACUCGUUCCUUGUGUGCCACUG   659 Target Full Sequence	0.0	Zea mays Vacuolar protein sorting-associated protein 24 homolog 1 (umc2748), mRNA	NA	coding protein	psRNATarget
XM_020547541.1	ncRNA:24   UAUGAGCAAGGAACACACGGUGAC   1   |||||||||||||||||||||||| targets:4235   AUACUCGUUCCUUGUGUGCCACUG   4258 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC100273682 (LOC100273682), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU967272.1	ncRNA:24   UAUGAGCAAGGAACACACGGUGAC   1   ||||||*||||||||||||||||| targets:537   AUACUCAUUCCUUGUGUGCCACUG   560 Target Full Sequence	1.0	Zea mays clone 300934 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU949300.1	ncRNA:24   UAUGAGCAAGGAACACACGGUGAC   1   ||||||*||||||||||||||||| targets:120   AUACUCAUUCCUUGUGUGCCACUG   143 Target Full Sequence	1.0	Zea mays clone 400899 mRNA sequence	NA	coding protein	psRNATarget
EZ080420.1	ncRNA:24   UAUGAGCAAGGAACACACGGUGAC   1   |||*||*||||||||||||||||| targets:58   AUAGUCAUUCCUUGUGUGCCACUG   81 Target Full Sequence	1.0	TSA: Zea mays contig16059, mRNA sequence	NA	coding protein	psRNATarget
EU942982.1	ncRNA:24   UAUGAGCAAGGAACACACGGUGAC   1   ||||||*|*||||||||||||||| targets:32   AUACUCAUCCCUUGUGUGCCACUG   55 Target Full Sequence	2.0	Zea mays clone 1548806 mRNA sequence	NA	coding protein	psRNATarget
BT036355.1	ncRNA:24   UAUGAGCAAGGAACACACGGUGAC   1   ||||||*|*||||||||||||||| targets:951   AUACUCAUCCCUUGUGUGCCACUG   974 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0108G21 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008655872.2	ncRNA:24   UAUGAGCAAGGAACACACGGUGAC   1   ||||||*||||||||*|||||||| targets:1109   AUACUCAUUCCUUGUAUGCCACUG   1132 Target Full Sequence	2.5	PREDICTED: Zea mays glutathione S-transferase T3-like (LOC103634314), mRNA	NA	coding protein	psRNATarget
LQ238967.1	ncRNA:24   UAUGAGCAAGGAACACACGGUGAC   1   =|||||*||*|||||||||||||| targets:7   GUACUCAUUACUUGUGUGCCACUG   30 Target Full Sequence	2.0	Sequence 4962 from Patent EP2985353	NA	coding protein	psRNATarget
JB167298.1	ncRNA:24   UAUGAGCAAGGAACACACGGUGAC   1   =|||||*||*|||||||||||||| targets:7   GUACUCAUUACUUGUGUGCCACUG   30 Target Full Sequence	2.0	Sequence 4962 from Patent EP2559767	NA	coding protein	psRNATarget
HI406837.1	ncRNA:24   UAUGAGCAAGGAACACACGGUGAC   1   =|||||*||*|||||||||||||| targets:7   GUACUCAUUACUUGUGUGCCACUG   30 Target Full Sequence	2.0	Sequence 4962 from Patent EP2074227	NA	coding protein	psRNATarget