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BaseInfo

ncRNA ID novel_zma_miR12800
Species Zea mays
Class miRNA
Genome position Chr8:55287607-55287683 [+]
Reference genome RefGen_v4
Source SRR5451003
Length 24
Mature sequence(if miRNA) 54 - CUUAAGUUGGAAUAAUUCGGUCGG - 77
Stem-loop(if miRNA) --   G -U       U         ---U     A   U
  GAC G  UUAUUCC AUUUAAGUG    GGUCU GCC C
  ||| |  ||||||| |||||||||    ||||| ||| U
  CUG C  AAUAAGG UGAAUUCAC    UCAGG CGG A
GG   G UU       U         UGAU     G   A
Stem-loop sequence GACGGUUUAUUCCUAUUUAAGUGUGGUCUAGCCUCUAAGGCGGGACUUAGUCACUUAAGUUGGAAUAAUUCGGUCGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT084202.2
ncRNA:24   GGCUGGCUUAAUAAGGUUGAAUUC   1
  |=|*||*|||||||||||||||||
targets:343   CUGCCCAAAUUAUUCCAACUUAAG   366

1.0 Zea mays full-length cDNA clone ZM_BFb0088N15 mRNA, complete cds NA coding protein psRNATarget