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BaseInfo

ncRNA ID	novel_zma_miR12797
Species	Zea mays
Class	miRNA
Genome position	Chr8:10919377-10919528 [-]
Reference genome	RefGen_v4
Source	SRR5451003;SRR5451005
Length	21
Mature sequence(if miRNA)	1 - UCUAAUGGAUUAGAUGGUUUG - 21
Stem-loop(if miRNA)	--                    CG     A          C  A    ACAUUUAAACCCUUCCACCACCAGCUCAA   AACUAUCUGAUCCAUUAGAU  UGAUC AACCGUAGGU AC UUUA                             U   ||||||||||||||||||||  ||||| |||||||||| || ||||   UUGGUAGAUUAGGUAAUCUA  GCUAG UUGGUAUCUA UG UUGG                             A GU                    AU     G          -  -    UAUCAAACAAUCCCAAAAAAAUAUUUCUA
Stem-loop sequence	AACUAUCUGAUCCAUUAGAUCGUGAUCAAACCGUAGGUCACAUUUAACAUUUAAACCCUUCCACCACCAGCUCAAUAAUCUUUAUAAAAAAACCCUAACAAACUAUGGUUGUAUCUAUGGUUGGAUCGUAAUCUAAUGGAUUAGAUGGUUUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI403395.1	ncRNA:21   GUUUGGUAGAUUAGGUAAUCU   1   ||||||||||||||||||||| targets:34   CAAACCAUCUAAUCCAUUAGA   54 Target Full Sequence	0.0	Sequence 1520 from Patent EP2074227	NA	coding protein	psRNATarget
JB163856.1	ncRNA:21   GUUUGGUAGAUUAGGUAAUCU   1   ||||||||||||||||||||| targets:34   CAAACCAUCUAAUCCAUUAGA   54 Target Full Sequence	0.0	Sequence 1520 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235525.1	ncRNA:21   GUUUGGUAGAUUAGGUAAUCU   1   ||||||||||||||||||||| targets:34   CAAACCAUCUAAUCCAUUAGA   54 Target Full Sequence	0.0	Sequence 1520 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020548736.1	ncRNA:21   GUUUGGUAGAUUAGGUAAUCU   1   =|||||||||||||||||||| targets:1687   UAAACCAUCUAAUCCAUUAGA   1707 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC103648255 (LOC103648255), mRNA	NA	coding protein	psRNATarget
JB163917.1	ncRNA:21   GUUUGGUAGAUUAGGUAAUCU   1   ||||||||||=|||||||||| targets:35   CAAACCAUCUGAUCCAUUAGA   55 Target Full Sequence	1.5	Sequence 1581 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235586.1	ncRNA:21   GUUUGGUAGAUUAGGUAAUCU   1   ||||||||||=|||||||||| targets:35   CAAACCAUCUGAUCCAUUAGA   55 Target Full Sequence	1.5	Sequence 1581 from Patent EP2985353	NA	coding protein	psRNATarget
HI403456.1	ncRNA:21   GUUUGGUAGAUUAGGUAAUCU   1   ||||||||||=|||||||||| targets:35   CAAACCAUCUGAUCCAUUAGA   55 Target Full Sequence	1.5	Sequence 1581 from Patent EP2074227	NA	coding protein	psRNATarget
HI403426.1	ncRNA:21   GUUUGGUAGAUUAGGUAAUCU   1   ||||||||||=|||||||||| targets:33   CAAACCAUCUGAUCCAUUAGA   53 Target Full Sequence	1.5	Sequence 1551 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235556.1	ncRNA:21   GUUUGGUAGAUUAGGUAAUCU   1   ||||||||||=|||||||||| targets:33   CAAACCAUCUGAUCCAUUAGA   53 Target Full Sequence	1.5	Sequence 1551 from Patent EP2985353	NA	coding protein	psRNATarget
JB163887.1	ncRNA:21   GUUUGGUAGAUUAGGUAAUCU   1   ||||||||||=|||||||||| targets:33   CAAACCAUCUGAUCCAUUAGA   53 Target Full Sequence	1.5	Sequence 1551 from Patent EP2559767	NA	coding protein	psRNATarget
BT066599.1	ncRNA:21   GUUUGGUAGAUUAGGUAAUCU   1   |||||=||||=|||||||||| targets:676   CAAACUAUCUGAUCCAUUAGA   696 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0034B07 mRNA, complete cds	NA	coding protein	psRNATarget
JB163394.1	ncRNA:21   GUUUGGUAGAUUAGGUAAUCU   1   =|||||||||=|||||||||| targets:42   UAAACCAUCUGAUCCAUUAGA   62 Target Full Sequence	1.5	Sequence 1058 from Patent EP2559767	NA	coding protein	psRNATarget
HI402933.1	ncRNA:21   GUUUGGUAGAUUAGGUAAUCU   1   =|||||||||=|||||||||| targets:42   UAAACCAUCUGAUCCAUUAGA   62 Target Full Sequence	1.5	Sequence 1058 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235063.1	ncRNA:21   GUUUGGUAGAUUAGGUAAUCU   1   =|||||||||=|||||||||| targets:42   UAAACCAUCUGAUCCAUUAGA   62 Target Full Sequence	1.5	Sequence 1058 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008679933.2	ncRNA:21   GUUUGGUAGAUUAGGUAAUCU   1   ||||||||||*|||||||||| targets:1661   CAAACCAUCUUAUCCAUUAGA   1681 Target Full Sequence	1.5	PREDICTED: Zea mays long chain base biosynthesis protein 2a (LOC103652945), transcript variant X3, mRNA	NA	coding protein	psRNATarget
NM_001151629.1	ncRNA:21   GUUUGGUAGAUUAGGUAAUCU   1   ||||=|||||*|||||||||| targets:2067   CAAAUCAUCUCAUCCAUUAGA   2087 Target Full Sequence	2.5	Zea mays uncharacterized LOC100278316 (si946092e03), mRNA	NA	coding protein	psRNATarget
EU972964.1	ncRNA:21   GUUUGGUAGAUUAGGUAAUCU   1   ||||=|||||*|||||||||| targets:2067   CAAAUCAUCUCAUCCAUUAGA   2087 Target Full Sequence	2.5	Zea mays clone 390894 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
LQ241182.1	ncRNA:21   GUUUGGUAGAUUAGGUAAUCU   1   ||||=|||||*|||||||||| targets:42   CAAAUCAUCUCAUCCAUUAGA   62 Target Full Sequence	2.5	Sequence 7177 from Patent EP2985353	NA	coding protein	psRNATarget
HI409052.1	ncRNA:21   GUUUGGUAGAUUAGGUAAUCU   1   ||||=|||||*|||||||||| targets:42   CAAAUCAUCUCAUCCAUUAGA   62 Target Full Sequence	2.5	Sequence 7177 from Patent EP2074227	NA	coding protein	psRNATarget
JB169513.1	ncRNA:21   GUUUGGUAGAUUAGGUAAUCU   1   ||||=|||||*|||||||||| targets:42   CAAAUCAUCUCAUCCAUUAGA   62 Target Full Sequence	2.5	Sequence 7177 from Patent EP2559767	NA	coding protein	psRNATarget
HI403147.1	ncRNA:21   GUUUGGUAGAUUAGGUAAUCU   1   |||*||||||=|||||||||| targets:34   CAAUCCAUCUGAUCCAUUAGA   54 Target Full Sequence	2.5	Sequence 1272 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235277.1	ncRNA:21   GUUUGGUAGAUUAGGUAAUCU   1   |||*||||||=|||||||||| targets:34   CAAUCCAUCUGAUCCAUUAGA   54 Target Full Sequence	2.5	Sequence 1272 from Patent EP2985353	NA	coding protein	psRNATarget
JB163608.1	ncRNA:21   GUUUGGUAGAUUAGGUAAUCU   1   |||*||||||=|||||||||| targets:34   CAAUCCAUCUGAUCCAUUAGA   54 Target Full Sequence	2.5	Sequence 1272 from Patent EP2559767	NA	coding protein	psRNATarget