Search result

BaseInfo

ncRNA ID	novel_zma_miR12781
Species	Zea mays
Class	miRNA
Genome position	Chr1:161958698-161958823 [+]
Reference genome	RefGen_v4
Source	SRR5451003
Length	24
Mature sequence(if miRNA)	103 - AUCUGAUACAAACGAACAAGGCCU - 126
Stem-loop(if miRNA)	--  A          AC         --CACCCA    C     -AG  AAUCAAA    -A  U   GC UUGUUCGUUU  GUCGGAUUG        GAAU GUUCC   CU       GUUU  UA A   || ||||||||||  |||||||||        |||| |||||   ||       ||||  || A   CG AACAAGCAAA  UAGUCUAAC        CUUG UAAGG   GA       CAAG  AU A UC  G          CA         CACCCAGC    C     AUA  -CCUAAC    AG  U
Stem-loop sequence	GCAUUGUUCGUUUACGUCGGAUUGCACCCAGAAUCGUUCCAGCUAAUCAAAGUUUAUAUAAAUUAGAGAACCAAUCCAGAUAGGAAUCGUUCCGACCCACCAAUCUGAUACAAACGAACAAGGCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT017425.1	ncRNA:24   UCCGGAACAAGCAAACAUAGUCUA   1   ||||||||||||||||||||=||| targets:757   AGGCCUUGUUCGUUUGUAUCGGAU   780 Target Full Sequence	1.5	Zea mays clone EL01N0402H01.c mRNA sequence	NA	coding protein	psRNATarget
BT063869.1	ncRNA:24   UCCGGAACAAGCAAACAUAGUCUA   1   ||||||||||||||||||||=||| targets:822   AGGCCUUGUUCGUUUGUAUCGGAU   845 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0114G15 mRNA, complete cds	NA	coding protein	psRNATarget
BT066445.1	ncRNA:24   UCCGGAACAAGCAAACAUAGUCUA   1   ||||||||||||||||||||=||| targets:852   AGGCCUUGUUCGUUUGUAUCGGAU   875 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0173D16 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175834.1	ncRNA:24   UCCGGAACAAGCAAACAUAGUCUA   1   ||||||||||||||||||||=||| targets:852   AGGCCUUGUUCGUUUGUAUCGGAU   875 Target Full Sequence	1.5	Zea mays 14-dihydroxy-2-naphthoyl-CoA thioesterase 1 (LOC100383169), mRNA	NA	coding protein	psRNATarget
EU977040.1	ncRNA:24   UCCGGAACAAGCAAACAUAGUCUA   1   ||*||||||||||||||||||||| targets:593   AGUCCUUGUUCGUUUGUAUCAGAU   616 Target Full Sequence	0.0	Zea mays clone 997067 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU973283.1	ncRNA:24   UCCGGAACAAGCAAACAUAGUCUA   1   =***=|||||||||||||||||=| targets:1124   GUUGUUUGUUCGUUUGUAUCAGGU   1147 Target Full Sequence	1.5	Zea mays clone 396115 mRNA sequence	NA	coding protein	psRNATarget