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BaseInfo

ncRNA ID novel_zma_miR12773
Species Zea mays
Class miRNA
Genome position Chr8:11202605-11202698 [+]
Reference genome RefGen_v4
Source SRR5451003;SRR5451004;SRR5451005
Length 24
Mature sequence(if miRNA) 71 - AAUACAUGUAGAUUGAGGUUAAUA - 94
Stem-loop(if miRNA) --      A                    AG      -   U    UA
  UUGACC CAAUCUAUAUGUAUUGAGGU  AUUGGA GUG AAUU  A
  |||||| ||||||||||||||||||||  |||||| ||| ||||
  AAUUGG GUUAGAUGUACAUAACUCUA  UAACCU CAC UUAA  A
AU      A                    CU      A   -    UC
Stem-loop sequence UUGACCACAAUCUAUAUGUAUUGAGGUAGAUUGGAGUGUAAUUUAAACUAAUUCACAUCCAAUUCAUCUCAAUACAUGUAGAUUGAGGUUAAUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ235096.1
ncRNA:24   AUAAUUGGAGUUAGAUGUACAUAA   1
  ||||=|=|||||||||||||||||
targets:5   UAUUGAUCUCAAUCUACAUGUAUU   28

1.0 Sequence 1091 from Patent EP2985353 NA coding protein psRNATarget
HI402966.1
ncRNA:24   AUAAUUGGAGUUAGAUGUACAUAA   1
  ||||=|=|||||||||||||||||
targets:5   UAUUGAUCUCAAUCUACAUGUAUU   28

1.0 Sequence 1091 from Patent EP2074227 NA coding protein psRNATarget
JB163427.1
ncRNA:24   AUAAUUGGAGUUAGAUGUACAUAA   1
  ||||=|=|||||||||||||||||
targets:5   UAUUGAUCUCAAUCUACAUGUAUU   28

1.0 Sequence 1091 from Patent EP2559767 NA coding protein psRNATarget
BT019068.1
ncRNA:24   AUAAUUGGAGUUAGAUGUACAUAA   1
  ||||=|*|||||||||||||||||
targets:168   UAUUGAGCUCAAUCUACAUGUAUU   191

1.0 Zea mays clone Contig631.F mRNA sequence NA coding protein psRNATarget
JB163478.1
ncRNA:24   AUAAUUGGAGUUAGAUGUACAUAA   1
  ||||=|||||||||*|||||||||
targets:5   UAUUGACCUCAAUCCACAUGUAUU   28

1.5 Sequence 1142 from Patent EP2559767 NA coding protein psRNATarget
LQ235147.1
ncRNA:24   AUAAUUGGAGUUAGAUGUACAUAA   1
  ||||=|||||||||*|||||||||
targets:5   UAUUGACCUCAAUCCACAUGUAUU   28

1.5 Sequence 1142 from Patent EP2985353 NA coding protein psRNATarget
HI403017.1
ncRNA:24   AUAAUUGGAGUUAGAUGUACAUAA   1
  ||||=|||||||||*|||||||||
targets:5   UAUUGACCUCAAUCCACAUGUAUU   28

1.5 Sequence 1142 from Patent EP2074227 NA coding protein psRNATarget
JB163411.1
ncRNA:24   AUAAUUGGAGUUAGAUGUACAUAA   1
  *|||=|||||||||*|||||||||
targets:5   CAUUGACCUCAAUCCACAUGUAUU   28

1.5 Sequence 1075 from Patent EP2559767 NA coding protein psRNATarget
LQ235080.1
ncRNA:24   AUAAUUGGAGUUAGAUGUACAUAA   1
  *|||=|||||||||*|||||||||
targets:5   CAUUGACCUCAAUCCACAUGUAUU   28

1.5 Sequence 1075 from Patent EP2985353 NA coding protein psRNATarget
HI402950.1
ncRNA:24   AUAAUUGGAGUUAGAUGUACAUAA   1
  *|||=|||||||||*|||||||||
targets:5   CAUUGACCUCAAUCCACAUGUAUU   28

1.5 Sequence 1075 from Patent EP2074227 NA coding protein psRNATarget
HI403009.1
ncRNA:24   AUAAUUGGAGUUAGAUGUACAUAA   1
  ||||*|||||||||*|||||||||
targets:5   UAUUCACCUCAAUCCACAUGUAUU   28

1.5 Sequence 1134 from Patent EP2074227 NA coding protein psRNATarget
LQ235139.1
ncRNA:24   AUAAUUGGAGUUAGAUGUACAUAA   1
  ||||*|||||||||*|||||||||
targets:5   UAUUCACCUCAAUCCACAUGUAUU   28

1.5 Sequence 1134 from Patent EP2985353 NA coding protein psRNATarget
JB163470.1
ncRNA:24   AUAAUUGGAGUUAGAUGUACAUAA   1
  ||||*|||||||||*|||||||||
targets:5   UAUUCACCUCAAUCCACAUGUAUU   28

1.5 Sequence 1134 from Patent EP2559767 NA coding protein psRNATarget
JB163457.1
ncRNA:24   AUAAUUGGAGUUAGAUGUACAUAA   1
  ||||*|||||||||*|||||||||
targets:5   UAUUCACCUCAAUCCACAUGUAUU   28

1.5 Sequence 1121 from Patent EP2559767 NA coding protein psRNATarget
HI402996.1
ncRNA:24   AUAAUUGGAGUUAGAUGUACAUAA   1
  ||||*|||||||||*|||||||||
targets:5   UAUUCACCUCAAUCCACAUGUAUU   28

1.5 Sequence 1121 from Patent EP2074227 NA coding protein psRNATarget
LQ235126.1
ncRNA:24   AUAAUUGGAGUUAGAUGUACAUAA   1
  ||||*|||||||||*|||||||||
targets:5   UAUUCACCUCAAUCCACAUGUAUU   28

1.5 Sequence 1121 from Patent EP2985353 NA coding protein psRNATarget
BT065101.1
ncRNA:24   AUAAUUGGAGUUAGAUGUACAUAA   1
  ||||*||=*|||||||||||||||
targets:1613   UAUUCACUACAAUCUACAUGUAUU   1636

2.0 Zea mays full-length cDNA clone ZM_BFc0059J08 mRNA, complete cds NA coding protein psRNATarget
NM_001137719.1
ncRNA:24   AUAAUUGGAGUUAGAUGUACAUAA   1
  ||||*||=*|||||||||||||||
targets:1589   UAUUCACUACAAUCUACAUGUAUU   1612

2.0 Zea mays uncharacterized LOC100192499 (LOC100192499), mRNA NA coding protein psRNATarget
BT034494.1
ncRNA:24   AUAAUUGGAGUUAGAUGUACAUAA   1
  ||||*||=*|||||||||||||||
targets:1589   UAUUCACUACAAUCUACAUGUAUU   1612

2.0 Zea mays full-length cDNA clone ZM_BFc0173M10 mRNA, complete cds NA coding protein psRNATarget
HI402937.1
ncRNA:24   AUAAUUGGAGUUAGAUGUACAUAA   1
  *||*=|||||||||*|||||||||
targets:5   CAUAGACCUCAAUCCACAUGUAUU   28

1.5 Sequence 1062 from Patent EP2074227 NA coding protein psRNATarget
LQ235067.1
ncRNA:24   AUAAUUGGAGUUAGAUGUACAUAA   1
  *||*=|||||||||*|||||||||
targets:5   CAUAGACCUCAAUCCACAUGUAUU   28

1.5 Sequence 1062 from Patent EP2985353 NA coding protein psRNATarget
JB163398.1
ncRNA:24   AUAAUUGGAGUUAGAUGUACAUAA   1
  *||*=|||||||||*|||||||||
targets:5   CAUAGACCUCAAUCCACAUGUAUU   28

1.5 Sequence 1062 from Patent EP2559767 NA coding protein psRNATarget
XM_020539161.1
ncRNA:24   AUAAUUGGAGUUAGAUGUACAUAA   1
  **|||*||||||*|||||||||||
targets:1326   ACUUAUCCUCAAACUACAUGUAUU   1349

2.5 PREDICTED: Zea mays diacylglycerol O-acyltransferase 1-like (DGAT1-2), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001301624.1
ncRNA:24   AUAAUUGGAGUUAGAUGUACAUAA   1
  **|||*||||||*|||||||||||
targets:811   ACUUAUCCUCAAACUACAUGUAUU   834

2.5 Zea mays diacylglycerol O-acyltransferase 1-like (DGAT1-2), mRNA NA coding protein psRNATarget
EU039830.1
ncRNA:24   AUAAUUGGAGUUAGAUGUACAUAA   1
  **|||*||||||*|||||||||||
targets:811   ACUUAUCCUCAAACUACAUGUAUU   834

2.5 Zea mays diacylglycerol acyltransferase (DGAT1-2) mRNA, DGAT1-2-ASKC28IB1 allele, complete cds NA coding protein psRNATarget
AY110660.1
ncRNA:24   AUAAUUGGAGUUAGAUGUACAUAA   1
  **|||*||||||*|||||||||||
targets:171   ACUUAUCCUCAAACUACAUGUAUU   194

2.5 Zea mays CL739_1 mRNA sequence NA coding protein psRNATarget
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