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BaseInfo

ncRNA ID	osa-miRf10871-npr
Species	Oryza sativa
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	20
Mature sequence(if miRNA)	NA - UGAGGUACCGGUACCUCGAG - NA
Stem-loop(if miRNA)	-AAAA   C                    C           A    UA   -----AU  A UAUAACAAUAU      GUA CUUGAGGUACCGGUACCUCA GGUACCAAAUC UUUC  AUC       UG A           C      ||| |||||||||||||||||||| ||||||||||| ||||  |||       || |           C      CAU GAGCUCCAUGGCCAUGGAGU CCAUGGUUUAG AAAG  UAG       GA U           A UUUUC   A                    A           C    GC   CAACCUA  - CGAUCCAUCCU
Stem-loop sequence	AAAAGUACCUUGAGGUACCGGUACCUCACGGUACCAAAUCAUUUCUAAUCAUUGAAUAUAACAAUAUCCAUCCUACCUAGCUAGAUCCAACGAUCGGAAACGAUUUGGUACCAUGAGGUACCGGUACCUCGAGAUACCUUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015779655.1	ncRNA:20   GAGCUCCAUGGCCAUGGAGU   1   ||||||||||=||||||||| targets:1480   CUCGAGGUACUGGUACCUCA   1499 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107280684 (LOC107280684), transcript variant X1, mRNA	uncharacterized LOC107280684(LOC107280684)	coding protein	psRNATarget
LQ235663.1	ncRNA:20   GAGCUCCAUGGCCAUGGAGU   1   |||||||||||||||||*|| targets:26   CUCGAGGUACCGGUACCCCA   45 Target Full Sequence	1.5	Sequence 1658 from Patent EP2985353	NA	coding protein	psRNATarget
JB163994.1	ncRNA:20   GAGCUCCAUGGCCAUGGAGU   1   |||||||||||||||||*|| targets:26   CUCGAGGUACCGGUACCCCA   45 Target Full Sequence	1.5	Sequence 1658 from Patent EP2559767	NA	coding protein	psRNATarget
HI403533.1	ncRNA:20   GAGCUCCAUGGCCAUGGAGU   1   |||||||||||||||||*|| targets:26   CUCGAGGUACCGGUACCCCA   45 Target Full Sequence	1.5	Sequence 1658 from Patent EP2074227	NA	coding protein	psRNATarget
XM_015786123.1	ncRNA:20   GAGCUCCAUGGCCAUGGAGU   1   ||||||||||||*||||||| targets:636   CUCGAGGUACCGAUACCUCA   655 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4340617 (LOC4340617), mRNA	uncharacterized LOC4340617(LOC4340617)	coding protein	psRNATarget
XM_015760380.1	ncRNA:20   GAGCUCCAUGGCCAUGGAGU   1   |||||*|||||||||||||| targets:1027   CUCGAAGUACCGGUACCUCA   1046 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group tropinone reductase homolog At5g06060 (LOC4326949), mRNA	tropinone reductase homolog At5g06060(LOC4326949)	coding protein	psRNATarget
AK287529.1	ncRNA:20   GAGCUCCAUGGCCAUGGAGU   1   ||||||||||||*||||||| targets:147   CUCGAGGUACCGAUACCUCA   166 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J065001C03, full insert sequence	NA	coding protein	psRNATarget
AK240791.1	ncRNA:20   GAGCUCCAUGGCCAUGGAGU   1   ||||||||||||*||||||| targets:147   CUCGAGGUACCGAUACCUCA   166 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J065001C03, full insert sequence	NA	coding protein	psRNATarget
JB164620.1	ncRNA:20   GAGCUCCAUGGCCAUGGAGU   1   ||||||*|||=||||||||| targets:7   CUCGAGUUACUGGUACCUCA   26 Target Full Sequence	2.5	Sequence 2284 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236289.1	ncRNA:20   GAGCUCCAUGGCCAUGGAGU   1   ||||||*|||=||||||||| targets:7   CUCGAGUUACUGGUACCUCA   26 Target Full Sequence	2.5	Sequence 2284 from Patent EP2985353	NA	coding protein	psRNATarget
HI404159.1	ncRNA:20   GAGCUCCAUGGCCAUGGAGU   1   ||||||*|||=||||||||| targets:7   CUCGAGUUACUGGUACCUCA   26 Target Full Sequence	2.5	Sequence 2284 from Patent EP2074227	NA	coding protein	psRNATarget
HI404119.1	ncRNA:20   GAGCUCCAUGGCCAUGGAGU   1   ||||||||||||*||||||= targets:27   CUCGAGGUACCGAUACCUCG   46 Target Full Sequence	2.5	Sequence 2244 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236249.1	ncRNA:20   GAGCUCCAUGGCCAUGGAGU   1   ||||||||||||*||||||= targets:27   CUCGAGGUACCGAUACCUCG   46 Target Full Sequence	2.5	Sequence 2244 from Patent EP2985353	NA	coding protein	psRNATarget
JB164580.1	ncRNA:20   GAGCUCCAUGGCCAUGGAGU   1   ||||||||||||*||||||= targets:27   CUCGAGGUACCGAUACCUCG   46 Target Full Sequence	2.5	Sequence 2244 from Patent EP2559767	NA	coding protein	psRNATarget
XM_015795856.1	ncRNA:20   GAGCUCCAUGGCCAUGGAGU   1   *|||||*||||||||||||| targets:414   AUCGAGUUACCGGUACCUCA   433 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4347512 (LOC4347512), transcript variant X1, mRNA	uncharacterized LOC4347512(LOC4347512)	coding protein	psRNATarget
XM_015778221.1	ncRNA:20   GAGCUCCAUGGCCAUGGAGU   1   *|||||*||||||||||||| targets:2985   AUCGAGAUACCGGUACCUCA   3004 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group wall-associated receptor kinase 3-like (LOC107278106), transcript variant X2, mRNA	wall-associated receptor kinase 3-like(LOC107278106)	coding protein	psRNATarget
XM_015778220.1	ncRNA:20   GAGCUCCAUGGCCAUGGAGU   1   *|||||*||||||||||||| targets:3036   AUCGAGAUACCGGUACCUCA   3055 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group wall-associated receptor kinase 3-like (LOC107278106), transcript variant X1, mRNA	wall-associated receptor kinase 3-like(LOC107278106)	coding protein	psRNATarget
AK068069.1	ncRNA:20   GAGCUCCAUGGCCAUGGAGU   1   *|||=|||*||||||||||| targets:309   GUCGGGGUUCCGGUACCUCA   328 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013134H10, full insert sequence	NA	coding protein	psRNATarget
XM_015781443.1	ncRNA:20   GAGCUCCAUGGCCAUGGAGU   1   *|||=|||*||||||||||| targets:375   GUCGGGGUUCCGGUACCUCA   394 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group ubiquitin carboxyl-terminal hydrolase 4 (LOC4336009), mRNA	ubiquitin carboxyl-terminal hydrolase 4(LOC4336009)	coding protein	psRNATarget
AK100297.1	ncRNA:20   GAGCUCCAUGGCCAUGGAGU   1   ||||||*|||||*||||||| targets:1308   CUCGAGAUACCGAUACCUCA   1327 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023077B14, full insert sequence	NA	coding protein	psRNATarget
XM_015793616.1	ncRNA:20   GAGCUCCAUGGCCAUGGAGU   1   ||||||*|||||*||||||| targets:1483   CUCGAGAUACCGAUACCUCA   1502 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable auxin efflux carrier component 4 (LOC4346116), mRNA	probable auxin efflux carrier component 4(LOC4346116)	coding protein	psRNATarget