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BaseInfo

ncRNA ID	ath-miR781a
Species	Arabidopsis thaliana
Class	miRNA
Genome position	chr1:7423518-7423611 [+]
Reference genome	TAIR10
Source	miRBase
Length	21
Mature sequence(if miRNA)	6 - UUAGAGUUUUCUGGAUACUUA - 26
Stem-loop(if miRNA)	-                   UU     C  A A     A UCAAAUU AGAGUUUUCUGGAUACUUA  AGUUA UA C AAGAG G ||||||| |||||||||||||||||||  ||||| || | ||||| G AGUUUAA UCUCAAAAGACCUAUGAAU  UCAAU AU G UUCUU G        A                   UU     U  A C     C
Stem-loop sequence	UCAAAUUAGAGUUUUCUGGAUACUUAUUAGUUACUAACAAAGAGAGGGCUUCUUCGAUAUUAACUUUUAAGUAUCCAGAAAACUCUAAAUUUGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AY086502.1	ncRNA:21   AUUCAUAGGUCUUUUGAGAUU   1   **||||||||||||||||||= targets:154   CUAGUAUCCAGAAAACUCUAG   174 Target Full Sequence	1.0	Arabidopsis thaliana clone 25501 mRNA, complete sequence	NA	coding protein	psRNATarget
NM_122255.6	ncRNA:21   AUUCAUAGGUCUUUUGAGAUU   1   **||||||||||||||||||= targets:1237   CUAGUAUCCAGAAAACUCUAG   1257 Target Full Sequence	1.0	Arabidopsis thaliana SWIB/MDM2, Plus-3 and GYF domain-containing protein mRNA	SWIB/MDM2, Plus-3 and GYF domain-containing protein(AT5G23480)	coding protein	psRNATarget
NM_001343809.1	ncRNA:21   AUUCAUAGGUCUUUUGAGAUU   1   **||||||||||||||||||= targets:1330   CUAGUAUCCAGAAAACUCUAG   1350 Target Full Sequence	1.0	Arabidopsis thaliana SWIB/MDM2, Plus-3 and GYF domain-containing protein partial mRNA	SWIB/MDM2, Plus-3 and GYF domain-containing protein(AT5G23480)	coding protein	psRNATarget
NM_001343808.1	ncRNA:21   AUUCAUAGGUCUUUUGAGAUU   1   **||||||||||||||||||= targets:1370   CUAGUAUCCAGAAAACUCUAG   1390 Target Full Sequence	1.0	Arabidopsis thaliana SWIB/MDM2, Plus-3 and GYF domain-containing protein mRNA	SWIB/MDM2, Plus-3 and GYF domain-containing protein(AT5G23480)	coding protein	psRNATarget
NM_001343807.1	ncRNA:21   AUUCAUAGGUCUUUUGAGAUU   1   **||||||||||||||||||= targets:1576   CUAGUAUCCAGAAAACUCUAG   1596 Target Full Sequence	1.0	Arabidopsis thaliana SWIB/MDM2, Plus-3 and GYF domain-containing protein mRNA	SWIB/MDM2, Plus-3 and GYF domain-containing protein(AT5G23480)	coding protein	psRNATarget
NM_001343806.1	ncRNA:21   AUUCAUAGGUCUUUUGAGAUU   1   **||||||||||||||||||= targets:1576   CUAGUAUCCAGAAAACUCUAG   1596 Target Full Sequence	1.0	Arabidopsis thaliana SWIB/MDM2, Plus-3 and GYF domain-containing protein mRNA	SWIB/MDM2, Plus-3 and GYF domain-containing protein(AT5G23480)	coding protein	psRNATarget
NM_001343805.1	ncRNA:21   AUUCAUAGGUCUUUUGAGAUU   1   **||||||||||||||||||= targets:1689   CUAGUAUCCAGAAAACUCUAG   1709 Target Full Sequence	1.0	Arabidopsis thaliana SWIB/MDM2, Plus-3 and GYF domain-containing protein mRNA	SWIB/MDM2, Plus-3 and GYF domain-containing protein(AT5G23480)	coding protein	psRNATarget

Reference

1	PMID:16954541 "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant"; Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC; Genome Res. 16:1276-1288(2006).
2	PMID:17299599 "High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes"; Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC; PLoS One. 2:e219(2007).