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BaseInfo

ncRNA ID	novel_zma_miR12706
Species	Zea mays
Class	miRNA
Genome position	Chr5:49583613-49583838 [+]
Reference genome	RefGen_v4
Source	SRR5451003;SRR5451006;SRR2089699;SRR2089703;SRR2089705
Length	24
Mature sequence(if miRNA)	1 - ACAUAGAAGACUGGUGCACAUGGU - 24
Stem-loop(if miRNA)	--    A   G C                           AC                          C      -AUUAUU  A     A  UA     -   C  UACUACA   ACAU GAA A UGGUGCACAUGGUGCACAUAUUAAAUC  CAUCACUCAUUUUAGAUCUAACGUCU UAGUUG       CA UUUAC AA  ACACC UUC AC       C   |||| ||| | |||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||       || ||||| ||  ||||| ||| ||   UGUA CUU U ACCACGUGUACCACGUGUAUAAUUUAG  GUGGUGAGUAAAAUCUAGAUUGCAGA AUCAAC       GU AAAUG UU  UGUGG AAG UG       A CG    C   G A                           AA                          A      AAACCAU  A     A  CC     G   U  CACCACC
Stem-loop sequence	ACAUAGAAGACUGGUGCACAUGGUGCACAUAUUAAAUCACCAUCACUCAUUUUAGAUCUAACGUCUCUAGUUGAUUAUUCAAUUUACAAAUAACACCUUCCACUACUACACACCACCACGUUGAAGGGUGUCCUUAGUAAAAUGUACCAAACAACUAAAGACGUUAGAUCUAAAAUGAGUGGUGAAGAUUUAAUAUGUGCACCAUGUGCACCAAUGUUCCAUGUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020552764.1	ncRNA:24   UGGUACACGUGGUCAGAAGAUACA   1   |||||||*|||||||||||||||| targets:3118   ACCAUGUACACCAGUCUUCUAUGU   3141 Target Full Sequence	1.0	PREDICTED: Zea mays probable serine/threonine-protein kinase WNK8 (LOC103654279), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008681116.2	ncRNA:24   UGGUACACGUGGUCAGAAGAUACA   1   |||||||*|||||||||||||||| targets:3296   ACCAUGUACACCAGUCUUCUAUGU   3319 Target Full Sequence	1.0	PREDICTED: Zea mays probable serine/threonine-protein kinase WNK8 (LOC103654279), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB163459.1	ncRNA:24   UGGUACACGUGGUCAGAAGAUACA   1   |=|||||*|||||*|||||||||| targets:224   AUCAUGUACACCAAUCUUCUAUGU   247 Target Full Sequence	2.5	Sequence 1123 from Patent EP2559767	NA	coding protein	psRNATarget
HI402998.1	ncRNA:24   UGGUACACGUGGUCAGAAGAUACA   1   |=|||||*|||||*|||||||||| targets:224   AUCAUGUACACCAAUCUUCUAUGU   247 Target Full Sequence	2.5	Sequence 1123 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235128.1	ncRNA:24   UGGUACACGUGGUCAGAAGAUACA   1   |=|||||*|||||*|||||||||| targets:224   AUCAUGUACACCAAUCUUCUAUGU   247 Target Full Sequence	2.5	Sequence 1123 from Patent EP2985353	NA	coding protein	psRNATarget