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BaseInfo

ncRNA ID	novel_zma_miR12700
Species	Zea mays
Class	miRNA
Genome position	Chr5:59275402-59275534 [-]
Reference genome	RefGen_v4
Source	SRR5451003
Length	24
Mature sequence(if miRNA)	1 - AAAGAACUAUAUUUUAGAACGGAG - 24
Stem-loop(if miRNA)	--    C C        A   G      A  AAACA           A UA UCU   ---        U   UUGU C AAAAUAUA UUC UUUUAG CU     CACAUUUAUUA U  A   ACG   GAUGUAGU U   |||| | |||||||| ||| |||||| ||     ||||||||||| |  |   |||   ||||||||   GGCA G UUUUAUAU AAG AAGAUC GG     GUGUAAGUAGU G  U   UGU   UUACGUCA G GA    A A        C   A      A  ----A           A GC UAC   UAU        U
Stem-loop sequence	UUGUCCCAAAAUAUAAUUCGUUUUAGACUAAACACACAUUUAUUAAUUAAUCUACGGAUGUAGUUUGUACUGCAUUUAUUGUCAUUCGGAUGAUGAAUGUGAGGACUAGAAAGAACUAUAUUUUAGAACGGAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008658671.2	ncRNA:24   GAGGCAAGAUUUUAUAUCAAGAAA   1   ||||||*||||||||||||||||| targets:2692   CUCCGUCCUAAAAUAUAGUUCUUU   2715 Target Full Sequence	1.0	PREDICTED: Zea mays BTB/POZ domain-containing protein (LOC103636319), mRNA	NA	coding protein	psRNATarget
XM_020545799.1	ncRNA:24   GAGGCAAGAUUUUAUAUCAAGAAA   1   ||||||||*||||||||||||||| targets:729   CUCCGUUCCAAAAUAUAGUUCUUU   752 Target Full Sequence	1.0	PREDICTED: Zea mays tRNA-specific adenosine deaminase 1-like (LOC103641570), mRNA	NA	coding protein	psRNATarget
XM_020543539.1	ncRNA:24   GAGGCAAGAUUUUAUAUCAAGAAA   1   ||||||||*=|||||||||||||| targets:2425   CUCCGUUCCGAAAUAUAGUUCUUU   2448 Target Full Sequence	2.0	PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_008660021.2	ncRNA:24   GAGGCAAGAUUUUAUAUCAAGAAA   1   ||||||||*=|||||||||||||| targets:2418   CUCCGUUCCGAAAUAUAGUUCUUU   2441 Target Full Sequence	2.0	PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_008660020.2	ncRNA:24   GAGGCAAGAUUUUAUAUCAAGAAA   1   ||||||||*=|||||||||||||| targets:2290   CUCCGUUCCGAAAUAUAGUUCUUU   2313 Target Full Sequence	2.0	PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020543536.1	ncRNA:24   GAGGCAAGAUUUUAUAUCAAGAAA   1   ||||||||*=|||||||||||||| targets:2290   CUCCGUUCCGAAAUAUAGUUCUUU   2313 Target Full Sequence	2.0	PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008674867.2	ncRNA:24   GAGGCAAGAUUUUAUAUCAAGAAA   1   ||||||*|||||||||||||=||| targets:2701   CUCCGUCCUAAAAUAUAGUUUUUU   2724 Target Full Sequence	2.5	PREDICTED: Zea mays BTB/POZ domain-containing protein (TIDP2945), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT062087.1	ncRNA:24   GAGGCAAGAUUUUAUAUCAAGAAA   1   ||||||*|||||||||||||=||| targets:590   CUCCGUCCUAAAAUAUAGUUUUUU   613 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0213N11 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174526.1	ncRNA:24   GAGGCAAGAUUUUAUAUCAAGAAA   1   ||||||*|||||||||||||=||| targets:590   CUCCGUCCUAAAAUAUAGUUUUUU   613 Target Full Sequence	2.5	Zea mays BTB/POZ domain-containing protein (TIDP2945), mRNA	NA	coding protein	psRNATarget
BT041170.1	ncRNA:24   GAGGCAAGAUUUUAUAUCAAGAAA   1   ||||||*|*||||||||||||||| targets:1373   CUCCGUCCCAAAAUAUAGUUCUUU   1396 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0183M02 mRNA, complete cds	NA	coding protein	psRNATarget
BT035488.2	ncRNA:24   GAGGCAAGAUUUUAUAUCAAGAAA   1   ||||||*|*||||||||||||||| targets:1301   CUCCGUCCCAAAAUAUAGUUCUUU   1324 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0066A14 mRNA, complete cds	NA	coding protein	psRNATarget
EU960252.1	ncRNA:24   GAGGCAAGAUUUUAUAUCAAGAAA   1   ||||||*|*||||||||||||||| targets:1275   CUCCGUCCCAAAAUAUAGUUCUUU   1298 Target Full Sequence	2.0	Zea mays clone 222898 mRNA sequence	NA	coding protein	psRNATarget
NM_001349831.1	ncRNA:24   GAGGCAAGAUUUUAUAUCAAGAAA   1   ||||||*|*||||||||||||||| targets:1248   CUCCGUCCCAAAAUAUAGUUCUUU   1271 Target Full Sequence	2.0	Zea mays uncharacterized LOC100193265 (LOC100193265), mRNA	NA	coding protein	psRNATarget
BT068279.1	ncRNA:24   GAGGCAAGAUUUUAUAUCAAGAAA   1   ||||||*|*||||||||||||||| targets:470   CUCCGUCCCAAAAUAUAGUUCUUU   493 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0103N03 mRNA, complete cds	NA	coding protein	psRNATarget
EZ106615.1	ncRNA:24   GAGG-CAAGAUUUUAUAUCAAGAAA   1   ||||-||*|*||||||||||||||| targets:153   CUCCUGUCCCAAAAUAUAGUUCUUU   177 Target Full Sequence	2.0	TSA: Zea mays contig42273, mRNA sequence	NA	coding protein	psRNATarget