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BaseInfo

ncRNA ID	novel_zma_miR12699
Species	Zea mays
Class	miRNA
Genome position	Chr10:65225619-65225737 [+]
Reference genome	RefGen_v4
Source	SRR5451003
Length	24
Mature sequence(if miRNA)	1 - AAAAUAUGAGGAGUGAGAAGAUGA - 24
Stem-loop(if miRNA)	---    UA    G               G CUA             -A    -     CU    AAAA  UGAG AGUGAGAAGAUGAUG A   GCUUAUUCCUCGA  CAAA AUACU  A    ||||  |||| ||||||||||||||| |   |||||||||||||  |||| |||||  U    UUUU  ACUC UCACUCUUCUACUAC U   UGAAUGAGGAGUU  GUUU UAUGA  A UUU    UC    G               G -UA             AG    G     UA
Stem-loop sequence	AAAAUAUGAGGAGUGAGAAGAUGAUGGACUAGCUUAUUCCUCGAACAAAAUACUCUAUAAUAGUAUGUUUGGAUUGAGGAGUAAGUAUUGCAUCAUCUUCUCACUGCUCACUUUUUUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AY105628.1	ncRNA:24   AGUAGAAGAGUGAGGAGU-AUAAAA   1   ||||||||||||||||||-|||||| targets:681   UCAUCUUCUCACUCCUCACUAUUUU   705 Target Full Sequence	3.0	Zea mays PCO108049 mRNA sequence	NA	coding protein	psRNATarget
XM_008664497.2	ncRNA:24   AGUAGAAGAGUGAGGAGUAUAAAA   1   |||||||||||||||||||*|||| targets:117   UCAUCUUCUCACUCCUCAUUUUUU   140 Target Full Sequence	1.5	PREDICTED: Zea mays F-box protein SKIP19 (LOC103641127), mRNA	NA	coding protein	psRNATarget
EU949478.1	ncRNA:24   AGUAGAAGAGUGAGGAGU-AUAAAA   1   ||=|||||||||||||||-|||||| targets:203   UCGUCUUCUCACUCCUCACUAUUUU   227 Target Full Sequence	3.0	Zea mays clone 416401 mRNA sequence	NA	coding protein	psRNATarget
NM_001152506.1	ncRNA:24   AGUAGAAGAGUGAGGAGUAUAAAA   1   |=|||||||||||||||||*|||| targets:1182   UUAUCUUCUCACUCCUCAUUUUUU   1205 Target Full Sequence	1.5	Zea mays OSJNBb0091E11.19-like protein (LOC100279506), mRNA	NA	coding protein	psRNATarget
BT054365.1	ncRNA:24   AGUAGAAGAGUGAGGAGUAUAAAA   1   |=|||||||||||||||||*|||| targets:1182   UUAUCUUCUCACUCCUCAUUUUUU   1205 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0002L04 mRNA, complete cds	NA	coding protein	psRNATarget
BT018820.1	ncRNA:24   AGUAGAAGAGUGAGGAGUAUAAAA   1   ||*|||||||||||||||*||||| targets:338   UCUUCUUCUCACUCCUCACAUUUU   361 Target Full Sequence	1.5	Zea mays clone EL01N0532C04.d mRNA sequence	NA	coding protein	psRNATarget
AY105441.1	ncRNA:24   AGUA--------GAAGAGUG-AGGAGUAUAAAA   1   *|||--------||||||||-|||||||||||| targets:412   ACAUGCAACUGGCUUCUCACAUCCUCAUAUUUU   444 Target Full Sequence	3.0	Zea mays PCO072816 mRNA sequence	NA	coding protein	psRNATarget
BT041338.2	ncRNA:24   AGUA--------GAAGAGUG-AGGAGUAUAAAA   1   *|||--------||||||||-|||||||||||| targets:1413   ACAUGCAACUGGCUUCUCACAUCCUCAUAUUUU   1445 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0102F11 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001158264.1	ncRNA:24   AGUA--------GAAGAGUG-AGGAGUAUAAAA   1   *|||--------||||||||-|||||||||||| targets:2528   ACAUGCAACUGGCUUCUCACAUCCUCAUAUUUU   2560 Target Full Sequence	3.0	Zea mays exocyst complex subunit Sec15-like family protein (LOC100285371), mRNA	NA	coding protein	psRNATarget
EU972062.1	ncRNA:24   AGUA--------GAAGAGUG-AGGAGUAUAAAA   1   *|||--------||||||||-|||||||||||| targets:2528   ACAUGCAACUGGCUUCUCACAUCCUCAUAUUUU   2560 Target Full Sequence	3.0	Zea mays clone 374219 exocyst complex subunit Sec15-like family protein mRNA, complete cds	NA	coding protein	psRNATarget