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BaseInfo

ncRNA ID	novel_zma_miR12688
Species	Zea mays
Class	miRNA
Genome position	Chr5:166233814-166233939 [-]
Reference genome	RefGen_v4
Source	SRR5451003
Length	22
Mature sequence(if miRNA)	105 - UUGCAUGGAAGAUGACUGUUGA - 126
Stem-loop(if miRNA)	--   C     --      C  UU  ---       -      --   CUCCU  GAU   U    ACAC   UUG AUGGA  AGAUGA UG  GA   UUUGUGU UUGUGU  AGG     CG   UCC UUGG    A   ||| |||||  |||||| ||  ||   ||||||| ||||||  |||     ||   ||| ||||   AAC UACUU  UCUACU AC  CU   AAACACG AGCGCG  UCC     GC   AGG AACC    C AG   -     AA      -  UU  CCG       U      AU   ---UU  -AC   U    CCUA
Stem-loop sequence	UUGCAUGGAAGAUGACUGUUGAUUUGUGUUUGUGUAGGCUCCUCGGAUUCCUUUGGACACACAUCCCCAAUGGACACGUUCCUUAGCGCGAUGCACAAAGCCUCUUCAUCAUCUAAUUCAUCAAGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ060362.1	ncRNA:22   AGUUGUCAGUAGAAGGUACGUU   1   |||||||||||||||||||||| targets:78   UCAACAGUCAUCUUCCAUGCAA   99 Target Full Sequence	0.0	TSA: Zea mays contig61484, mRNA sequence	NA	coding protein	psRNATarget
AY106945.1	ncRNA:22   AGUUGUCAGUAGAAGGUACGUU   1   *|*|==|*|||||||||||||| targets:313   CCCAUGGCCAUCUUCCAUGCAA   334 Target Full Sequence	3.0	Zea mays PCO116162 mRNA sequence	NA	coding protein	psRNATarget
EU961465.1	ncRNA:22   AGUUGUCAGUAGAAGGUACGUU   1   *|*|==|*|||||||||||||| targets:1384   CCCAUGGCCAUCUUCCAUGCAA   1405 Target Full Sequence	3.0	Zea mays clone 235720 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001150147.1	ncRNA:22   AGUUGUCAGUAGAAGGUACGUU   1   *|*|==|*|||||||||||||| targets:1384   CCCAUGGCCAUCUUCCAUGCAA   1405 Target Full Sequence	3.0	Zea mays uncharacterized LOC100276335 (umc1788a), mRNA	NA	coding protein	psRNATarget
BT060737.1	ncRNA:22   AGUUGUCAGUAGAAGGUACGUU   1   *|*|==|*|||||||||||||| targets:1506   CCCAUGGCCAUCUUCCAUGCAA   1527 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0041B08 mRNA, complete cds	NA	coding protein	psRNATarget