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BaseInfo

ncRNA ID	novel_zma_miR12675
Species	Zea mays
Class	miRNA
Genome position	Chr5:194087484-194087566 [+]
Reference genome	RefGen_v4
Source	SRR5451003;SRR5451004
Length	24
Mature sequence(if miRNA)	1 - AUGGAUUGAAAGGGAUUGAUACGG - 24
Stem-loop(if miRNA)	--         A         ---UA  GAUUAAACGAAUUUU   AUGGAUUGA AGGGAUUGA     CG               G   ||||||||| |||||||||     ||   UACCUAAUU UCCUUAACU     AA               A UA         C         CCCCC  AGUUAGAGAUCAUUU
Stem-loop sequence	AUGGAUUGAAAGGGAUUGAUACGGAUUAAACGAAUUUUGAUUUACUAGAGAUUGAAACCCCCUCAAUUCCUCUUAAUCCAUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT055069.1	ncRNA:24   GGCAUAGUUAGGGAAAGUUAGGUA   1   |||||||||||||*|||||||||| targets:971   CCGUAUCAAUCCCCUUCAAUCCAU   994 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0132H13 mRNA, complete cds	NA	coding protein	psRNATarget
BT041454.1	ncRNA:24   GGCAUAGUUAGGGAAAGUUAGGUA   1   |||||||||||||*|||||||||| targets:1492   CCGUAUCAAUCCCCUUCAAUCCAU   1515 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0061I22 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148011.2	ncRNA:24   GGCAUAGUUAGGGAAAGUUAGGUA   1   |||||||||||||*|||||||||| targets:1492   CCGUAUCAAUCCCCUUCAAUCCAU   1515 Target Full Sequence	1.5	Zea mays uncharacterized LOC100273594 (AY105910), mRNA	NA	coding protein	psRNATarget
AY105910.1	ncRNA:24   GGCAUAGUUAGGGAAAGUUAGGUA   1   |||||||||||||*|||||||||| targets:1478   CCGUAUCAAUCCCCUUCAAUCCAU   1501 Target Full Sequence	1.5	Zea mays PCO106969 mRNA sequence	NA	coding protein	psRNATarget
BT040193.1	ncRNA:24   GGCAUAGUUAGGGAAAGUUAGGUA   1   |||||||||||||*|||||||||| targets:1460   CCGUAUCAAUCCCCUUCAAUCCAU   1483 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0070L08 mRNA, complete cds	NA	coding protein	psRNATarget
BT064472.1	ncRNA:24   GGCAUAGUUAGGGAAAGUUAGGUA   1   |||||||||||||*|||||||||| targets:1416   CCGUAUCAAUCCCCUUCAAUCCAU   1439 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0172D22 mRNA, complete cds	NA	coding protein	psRNATarget
BT064935.1	ncRNA:24   GGCAUAGUUAGGGAAAGUUAGGUA   1   |||||||||||||||*|||||||| targets:831   CCGUAUCAAUCCCUUCCAAUCCAU   854 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0035J15 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008658331.2	ncRNA:24   GGCAUAGUUAGGGAAAGUUAGGUA   1   |||||||=|||||*|||||||||| targets:1693   CCGUAUCGAUCCCCUUCAAUCCAU   1716 Target Full Sequence	2.5	PREDICTED: Zea mays putative protein phosphatase 2C 46 (LOC103635969), mRNA	NA	coding protein	psRNATarget
XM_008661229.2	ncRNA:24   GGCAUAGUUAGGGAAAGUUAGGUA   1   ||--||||||=|||*||||||||| targets:2737   CC--AUCAAUUCCUCUCAAUCCAU   2758 Target Full Sequence	2.5	PREDICTED: Zea mays kanadaptin (LOC103638266), mRNA	NA	coding protein	psRNATarget
BT088422.1	ncRNA:24   GGCAUAGUUAGGGAAAGUUAGGUA   1   ==*|*||||||||*|||||||||| targets:381   UUUUUUCAAUCCCAUUCAAUCCAU   404 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0189N22 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001196996.1	ncRNA:24   GGCAUAGUUAGGGAAAGUUAGGUA   1   ==*|*||||||||*|||||||||| targets:381   UUUUUUCAAUCCCAUUCAAUCCAU   404 Target Full Sequence	1.5	Zea mays uncharacterized LOC100502518 (LOC100502518), mRNA	NA	coding protein	psRNATarget
EU962730.1	ncRNA:24   GGCAUAGUUAGGGAAAGUUAGGUA   1   ||---|||||||||*||||||||| targets:1071   CC---UCAAUCCCUCUCAAUCCAU   1091 Target Full Sequence	1.5	Zea mays clone 245054 mRNA sequence	NA	coding protein	psRNATarget