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BaseInfo

ncRNA ID	novel_zma_miR12647
Species	Zea mays
Class	miRNA
Genome position	Chr4:83577239-83577309 [-]
Reference genome	RefGen_v4
Source	SRR5451003
Length	24
Mature sequence(if miRNA)	48 - GGGAGUUGUCAGUGUAGGGAGGUU - 71
Stem-loop(if miRNA)	--      UG  A  G       G UC   -   UG   GGGAGU  UC GU UAGGGAG U  UCG GGU  A   ||||||  || || ||||||| |  ||| |||  U   UCCUUA  AG CA AUUUUUC A  AGC UCG  C UA      GU  A  G       G -U   G   UA
Stem-loop sequence	GGGAGUUGUCAGUGUAGGGAGGUUCUCGGGUUGAUCAUGCUGCGAUAGCUUUUUAGACAGAUGAUUCCUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT085686.2	ncRNA:24   UUGGAGGGAUGUGACUGUUGAGGG   1   =||||||||||||||||*|||||| targets:740   GACCUCCCUACACUGACCACUCCC   763 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0047L20 mRNA, complete cds	NA	coding protein	psRNATarget
BT085585.2	ncRNA:24   UUGGAGGGAUGUGACUGUUGAGGG   1   =||||||||||||||||*|||||| targets:730   GACCUCCCUACACUGACCACUCCC   753 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0036J03 mRNA, complete cds	NA	coding protein	psRNATarget
BT055683.2	ncRNA:24   UUGGAGGGAUGUGACUGUUGAGGG   1   =||||||||||||||||*|||||| targets:680   GACCUCCCUACACUGACCACUCCC   703 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0112J02 mRNA, complete cds	NA	coding protein	psRNATarget
BT054688.2	ncRNA:24   UUGGAGGGAUGUGACUGUUGAGGG   1   ==|||||||||||||||*|||||| targets:740   GGCCUCCCUACACUGACCACUCCC   763 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0082P04 mRNA, complete cds	NA	coding protein	psRNATarget
BT084566.2	ncRNA:24   UUGGAGGGAUGUGACUGUUGAGGG   1   ==|||||||||||||||*|||||| targets:754   GGCCUCCCUACACUGACCACUCCC   777 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0133J03 mRNA, complete cds	NA	coding protein	psRNATarget
BT066164.2	ncRNA:24   UUGGAGGGAUGUGACUGUUGAGGG   1   ==|||||||||||||||*|||||| targets:740   GGCCUCCCUACACUGACCACUCCC   763 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0047C23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175762.1	ncRNA:24   UUGGAGGGAUGUGACUGUUGAGGG   1   ==|||||||||||||||*|||||| targets:740   GGCCUCCCUACACUGACCACUCCC   763 Target Full Sequence	1.5	Zea mays uncharacterized LOC100383091 (LOC100383091), mRNA	NA	coding protein	psRNATarget
EU940868.1	ncRNA:24   UUGGAGGGAUGUGACUGUUGAGGG   1   ==|||||||||||||||*|||||| targets:1544   GGCCUCCCUACACUGACCACUCCC   1567 Target Full Sequence	1.5	Zea mays clone 1165273 mRNA sequence	NA	coding protein	psRNATarget
BT062452.2	ncRNA:24   UUGGAGGGAUGUGACUGUUGAGGG   1   =|||||||*||||||||*|||||| targets:756   GACCUCCCCACACUGACCACUCCC   779 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0299E23 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008680484.2	ncRNA:24   UUGGAGGGAUGUGACUGUUGAGGG   1   |=|=|*|||*|||||||||||||* targets:818   AGCUUACCUUCACUGACAACUCCA   841 Target Full Sequence	3.0	PREDICTED: Zea mays Calmodulin-binding protein 60 C (LOC103653644), mRNA	NA	coding protein	psRNATarget