Search result

BaseInfo

ncRNA ID novel_zma_miR12639
Species Zea mays
Class miRNA
Genome position Chr1:7467968-7468045 [-]
Reference genome RefGen_v4
Source SRR1997865;SRR1997866
Length 22
Mature sequence(if miRNA) 57 - CAAAGAUAAGAGUGGGAAAUGG - 78
Stem-loop(if miRNA) --      -     -GU     AU G A     G   UUUUG
  CAAAGA UAAGA   GGGAA  G G GCAUU AAC     U
  |||||| |||||   |||||  | | ||||| |||
  GUUUCU AUUCU   UCCUU  C C CGUAG UUG     C
GU      C     ACU     -- G -     -   UUCAC
Stem-loop sequence CAAAGAUAAGAGUGGGAAAUGGGAGCAUUGAACUUUUGUCCACUUGUUGAUGCCGCUUCCUUCAUCUUACUCUUUGUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ063819.1
ncRNA:22   GGUAAAGGGUGAGAAUAGAAAC   1
  *|=|||||||||||*|||||||
targets:214   GCGUUUCCCACUCUCAUCUUUG   235

1.5 TSA: Zea mays contig64942, mRNA sequence NA coding protein psRNATarget