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BaseInfo

ncRNA ID	novel_zma_miR12588
Species	Zea mays
Class	miRNA
Genome position	Chr1:56044845-56044945 [-]
Reference genome	RefGen_v4
Source	SRR1997865
Length	24
Mature sequence(if miRNA)	78 - GAGUAUUAAAUGUAGUCGGAUUAU - 101
Stem-loop(if miRNA)	--      U        -  G     -UAAA    -       AGCCGAAGA   GAGUAU AAAUGUAG UC GAUUA     ACUA AUUUGUC         U   |||||| |||||||| || |||||     |||| |||||||   CUCAUA UUUAUAUC GG UUGGU     UGAU UAAGCAG         U UC      C        U  G     UGACC    C       AGCAGAAAA
Stem-loop sequence	GAGUAUUAAAUGUAGUCGGAUUAUAAAACUAAUUUGUCAGCCGAAGAUUAAAAGACGAGACGAAUCUAGUCCAGUUGGUUGGGUCUAUAUUUCAUACUCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008671848.2	ncRNA:24   UAUUAGGCUGAUGUAAAUUAUGAG   1   |||||||||||||||||||||||| targets:779   AUAAUCCGACUACAUUUAAUACUC   802 Target Full Sequence	0.0	PREDICTED: Zea mays subtilisin-like protease SBT3.3 (LOC103647304), mRNA	NA	coding protein	psRNATarget
XM_008681237.2	ncRNA:24   UAUUAGGCUGAUGUAAAUUAUGAG   1   ||||||||||||||||||||||*| targets:20   AUAAUCCGACUACAUUUAAUACCC   43 Target Full Sequence	1.5	PREDICTED: Zea mays E3 ubiquitin-protein ligase BOI-like (LOC103654397), mRNA	NA	coding protein	psRNATarget
EU957829.1	ncRNA:24   UAUUAGGCUGAUGUAAAUUAUGAG   1   ||||||||||||||||||||||*| targets:1928   AUAAUCCGACUACAUUUAAUACCC   1951 Target Full Sequence	1.5	Zea mays clone 1624895 amino acid permease mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154684.1	ncRNA:24   UAUUAGGCUGAUGUAAAUUAUGAG   1   ||||||||||||||||||||||*| targets:1928   AUAAUCCGACUACAUUUAAUACCC   1951 Target Full Sequence	1.5	Zea mays amino acid permease (LOC100281764), mRNA	NA	coding protein	psRNATarget
BT017819.1	ncRNA:24   UAUUAGGCUGAUGUAAAUUAUGAG   1   ||||||||||||||||||||||*| targets:126   AUAAUCCGACUACAUUUAAUACCC   149 Target Full Sequence	1.5	Zea mays clone EL01N0507H03.c mRNA sequence	NA	coding protein	psRNATarget
BT084930.2	ncRNA:24   UAUUAGGCUGAUGUAAAUUAUGAG   1   ||||||||||||||||||||||*| targets:262   AUAAUCCGACUACAUUUAAUACCC   285 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0209B02 mRNA, complete cds	NA	coding protein	psRNATarget
EZ059877.1	ncRNA:24   UAUUAGGCUGAUGUAAAUUAUGAG   1   ||||||||||||||||||||||*| targets:9   AUAAUCCGACUACAUUUAAUACCC   32 Target Full Sequence	1.5	TSA: Zea mays contig60999, mRNA sequence	NA	coding protein	psRNATarget
EZ055807.1	ncRNA:24   UAUUAGGCUGAUGUAAAUUAUGAG   1   |||||=||||||||||||||||*| targets:72   AUAAUUCGACUACAUUUAAUACCC   95 Target Full Sequence	2.5	TSA: Zea mays contig56929, mRNA sequence	NA	coding protein	psRNATarget
EZ107977.1	ncRNA:20   AGGCUGAUGUAAAUUAUGAG   1   ||||||||||||||||||*| targets:1   UCCGACUACAUUUAAUACCC   20 Target Full Sequence	1.5	TSA: Zea mays contig43635, mRNA sequence	NA	coding protein	psRNATarget
XM_020537836.1	ncRNA:24   UAUUAGGCUGAUGUAAAUUAUGAG   1   |*=|*|=||=*||||||||||||| targets:3004   AAGAGCUGAUCACAUUUAAUACUC   3027 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC103625804 (LOC103625804), mRNA	NA	coding protein	psRNATarget