Search result

BaseInfo

ncRNA ID	novel_zma_miR12567
Species	Zea mays
Class	miRNA
Genome position	Chr2:150793451-150793534 [-]
Reference genome	RefGen_v4
Source	SRR5451003
Length	22
Mature sequence(if miRNA)	63 - AUGGCCGGACUGCCACAGGCUG - 84
Stem-loop(if miRNA)	--A       A       AG  -- GCGCGCCCGGUGUCAGGGU    UGGCCGG CUGCCAC  GC  U                   G    ||||||| |||||||  ||  |    GCUGGCC GACGGUG  GC  C                   A UCG       A       --  GU ACGCGGGUGCUGGUGGCGU
Stem-loop sequence	AUGGCCGGACUGCCACAGGCUGCGCGCCCGGUGUCAGGGUGAUGCGGUGGUCGUGGGCGCACUGCGGUGGCAGACCGGUCGGCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020545539.1	ncRNA:22   GUCGGACACCGUCAGGCCGGUA   1   |||||*||||||||||||||*| targets:1981   CAGCCGGUGGCAGUCCGGCCUU   2002 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC109942952 (LOC109942952), mRNA	NA	coding protein	psRNATarget
XM_008662999.2	ncRNA:22   GUCGGACACCGUCAGGCCGGUA   1   ***||*|||||=|||||||||| targets:1155   ACUCCAGUGGCGGUCCGGCCAU   1176 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103640411 (LOC103640411), mRNA	NA	coding protein	psRNATarget
XM_008672878.1	ncRNA:22   GUCGGACACCGUCAGGCCGGUA   1   |=|*|||**||||||||||||| targets:1038   CGGGCUGGUGCAGUCCGGCCAU   1059 Target Full Sequence	3.0	PREDICTED: Zea mays UDP-glycosyltransferase 90A2 (LOC103648401), mRNA	NA	coding protein	psRNATarget
BT086535.1	ncRNA:22   GUCGGACACCGUCAGGCCGGUA   1   |=|*|||**||||||||||||| targets:1106   CGGGCUGGUGCAGUCCGGCCAU   1127 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0179F03 mRNA, complete cds	NA	coding protein	psRNATarget
BT055192.1	ncRNA:22   GUCGGACACCGUCAGGCCGGUA   1   |=|*|||**||||||||||||| targets:1202   CGGGCUGGUGCAGUCCGGCCAU   1223 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0132L01 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148005.1	ncRNA:22   GUCGGACACCGUCAGGCCGGUA   1   |=|*|||**||||||||||||| targets:1107   CGGGCUGGUGCAGUCCGGCCAU   1128 Target Full Sequence	3.0	Zea mays uncharacterized LOC100273588 (LOC100273588), mRNA	NA	coding protein	psRNATarget
BT041445.1	ncRNA:22   GUCGGACACCGUCAGGCCGGUA   1   |=|*|||**||||||||||||| targets:1107   CGGGCUGGUGCAGUCCGGCCAU   1128 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0061B17 mRNA, complete cds	NA	coding protein	psRNATarget