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BaseInfo

ncRNA ID	novel_zma_miR12565
Species	Zea mays
Class	miRNA
Genome position	Chr1:66940361-66940485 [-]
Reference genome	RefGen_v4
Source	SRR1997865
Length	24
Mature sequence(if miRNA)	1 - AAAUAUGAUUUCUAGUGGCGGUUU - 24
Stem-loop(if miRNA)	--                         G                         G  G        ACCGCCACUAGAAAUCGUAUUUCUA UGGCGGUUCCUUAAGAAAACUGUCA UA AAAUCC   ||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||A   UGGCGGUGAUCUUUAGUAUAAAGAU ACCGCCAAGGAAUUCUUUUGGCGGU AU UUUAGU UU                         G                         G  G
Stem-loop sequence	ACCGCCACUAGAAAUCGUAUUUCUAGUGGCGGUUCCUUAAGAAAACUGUCAGUAGAAAUCCAUGAUUUGUAGUGGCGGUUUUCUUAAGGAACCGCCAGUAGAAAUAUGAUUUCUAGUGGCGGUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ238012.1	ncRNA:24   UUUGGCGGUGAUCUUUAGUAUAAA   1   ||||||||||||||||||=||||| targets:38   AAACCGCCACUAGAAAUCGUAUUU   61 Target Full Sequence	1.5	Sequence 4007 from Patent EP2985353	NA	coding protein	psRNATarget
HI405882.1	ncRNA:24   UUUGGCGGUGAUCUUUAGUAUAAA   1   ||||||||||||||||||=||||| targets:38   AAACCGCCACUAGAAAUCGUAUUU   61 Target Full Sequence	1.5	Sequence 4007 from Patent EP2074227	NA	coding protein	psRNATarget
JB166343.1	ncRNA:24   UUUGGCGGUGAUCUUUAGUAUAAA   1   ||||||||||||||||||=||||| targets:38   AAACCGCCACUAGAAAUCGUAUUU   61 Target Full Sequence	1.5	Sequence 4007 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235116.1	ncRNA:24   UUUGGCGGUGAUCUUUAGUAUAAA   1   ||||||||||||||||||=||||| targets:16   AAACCGCCACUAGAAAUCGUAUUU   39 Target Full Sequence	1.5	Sequence 1111 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235114.1	ncRNA:24   UUUGGCGGUGAUCUUUAGUAUAAA   1   ||||||=||||||||||||||||| targets:16   AAACCGUCACUAGAAAUCAUAUUU   39 Target Full Sequence	1.0	Sequence 1109 from Patent EP2985353	NA	coding protein	psRNATarget
HI402986.1	ncRNA:24   UUUGGCGGUGAUCUUUAGUAUAAA   1   ||||||||||||||||||=||||| targets:16   AAACCGCCACUAGAAAUCGUAUUU   39 Target Full Sequence	1.5	Sequence 1111 from Patent EP2074227	NA	coding protein	psRNATarget
JB163447.1	ncRNA:24   UUUGGCGGUGAUCUUUAGUAUAAA   1   ||||||||||||||||||=||||| targets:16   AAACCGCCACUAGAAAUCGUAUUU   39 Target Full Sequence	1.5	Sequence 1111 from Patent EP2559767	NA	coding protein	psRNATarget
HI402984.1	ncRNA:24   UUUGGCGGUGAUCUUUAGUAUAAA   1   ||||||=||||||||||||||||| targets:16   AAACCGUCACUAGAAAUCAUAUUU   39 Target Full Sequence	1.0	Sequence 1109 from Patent EP2074227	NA	coding protein	psRNATarget
JB163445.1	ncRNA:24   UUUGGCGGUGAUCUUUAGUAUAAA   1   ||||||=||||||||||||||||| targets:16   AAACCGUCACUAGAAAUCAUAUUU   39 Target Full Sequence	1.0	Sequence 1109 from Patent EP2559767	NA	coding protein	psRNATarget
JB163487.1	ncRNA:24   UUUGGCGGUGAUCUUUAGUAUAAA   1   =|||||||||||||||||||*||| targets:34   GAACCGCCACUAGAAAUCAUUUUU   57 Target Full Sequence	1.5	Sequence 1151 from Patent EP2559767	NA	coding protein	psRNATarget
HI403026.1	ncRNA:24   UUUGGCGGUGAUCUUUAGUAUAAA   1   =|||||||||||||||||||*||| targets:34   GAACCGCCACUAGAAAUCAUUUUU   57 Target Full Sequence	1.5	Sequence 1151 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235156.1	ncRNA:24   UUUGGCGGUGAUCUUUAGUAUAAA   1   =|||||||||||||||||||*||| targets:34   GAACCGCCACUAGAAAUCAUUUUU   57 Target Full Sequence	1.5	Sequence 1151 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008681310.2	ncRNA:24   UUUGGCGGUGAUCUUUAGUAUAAA   1   =|||||||||*||||||||||||* targets:911   GAACCGCCACGAGAAAUCAUAUUA   934 Target Full Sequence	2.0	PREDICTED: Zea mays Protein ENHANCED DOWNY MILDEW 2 (LOC103654479), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008681311.2	ncRNA:24   UUUGGCGGUGAUCUUUAGUAUAAA   1   =|||||||||*||||||||||||* targets:954   GAACCGCCACGAGAAAUCAUAUUA   977 Target Full Sequence	2.0	PREDICTED: Zea mays Protein ENHANCED DOWNY MILDEW 2 (LOC103654479), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008681312.2	ncRNA:24   UUUGGCGGUGAUCUUUAGUAUAAA   1   =|||||||||*||||||||||||* targets:1069   GAACCGCCACGAGAAAUCAUAUUA   1092 Target Full Sequence	2.0	PREDICTED: Zea mays Protein ENHANCED DOWNY MILDEW 2 (LOC103654479), transcript variant X2, mRNA	NA	coding protein	psRNATarget