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BaseInfo

ncRNA ID	novel_zma_miR12563
Species	Zea mays
Class	miRNA
Genome position	Chr9:105920612-105920684 [+]
Reference genome	RefGen_v4
Source	SRR5105963
Length	21
Mature sequence(if miRNA)	53 - UUUAAUCCCCCUCAAUCCCCU - 73
Stem-loop(if miRNA)	-GU       A A         C    -C   A   A    GGAUUGA G GGAUUAAAU UCUU  CUA UCA A    ||||||| | ||||||||| ||||  ||| |||    CCUAACU C CCUAAUUUA AGAA  GAU AGU A UCC       C C         -    AA   A   A
Stem-loop sequence	GUGGAUUGAAGAGGAUUAAAUCUCUUCCUAAUCAAAAAUGAAUAGAAAAGAAUUUAAUCCCCCUCAAUCCCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ106495.1	ncRNA:21   UCC--CCUAACUCCCCCUAAUUU   1   |||--|||||||||||||||||| targets:52   AGGAGGGAUUGAGGGGGAUUAAA   74 Target Full Sequence	2.5	TSA: Zea mays contig42153, mRNA sequence	NA	coding protein	psRNATarget
BT068750.1	ncRNA:21   UCCCCUAACUCCCCCUAAUUU   1   ||*|||||||||||||||||| targets:77   AGUGGAUUGAGGGGGAUUAAA   97 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0377I06 mRNA, complete cds	NA	coding protein	psRNATarget
EZ059519.1	ncRNA:21   UCCCCUAACUCCCCCUAAUUU   1   =|||||||||*|||||||||| targets:438   GGGGGAUUGAAGGGGAUUAAA   458 Target Full Sequence	1.5	TSA: Zea mays contig60641, mRNA sequence	NA	coding protein	psRNATarget
BT042029.1	ncRNA:21   UCCCCUAACUCCCCCUAAUUU   1   |*|*||||||||*|||||||| targets:82   AUGAGAUUGAGGAGGAUUAAA   102 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0114D19 mRNA, complete cds	NA	coding protein	psRNATarget
EU947467.1	ncRNA:21   UCCCCUAACUCCCCCUAAUUU   1   ***|||||||||||||||||| targets:1233   UAUGGAUUGAGGGGGAUUAAA   1253 Target Full Sequence	1.0	Zea mays clone 343885 mRNA sequence	NA	coding protein	psRNATarget
NM_001323405.1	ncRNA:21   UCCCCUAACUCCCCCUAAUUU   1   ***|||||||||||||||||| targets:1936   UAUGGAUUGAGGGGGAUUAAA   1956 Target Full Sequence	1.0	Zea mays SKP1-interacting partner 15-like (LOC103648491), transcript variant 1, mRNA	NA	coding protein	psRNATarget
EZ080102.1	ncRNA:21   UCCCCUAACUCCCCCUAAUUU   1   |||*||||||||*|||||||| targets:38   AGGAGAUUGAGGAGGAUUAAA   58 Target Full Sequence	2.5	TSA: Zea mays contig15741, mRNA sequence	NA	coding protein	psRNATarget
NM_001348011.1	ncRNA:21   UCCCCUAACUCCCCCUAAUUU   1   ***|||||||||||||||=|| targets:381   UAUGGAUUGAGGGGGAUUGAA   401 Target Full Sequence	2.5	Zea mays hypothetical protein (LOC100277538), mRNA	NA	coding protein	psRNATarget
EU967673.1	ncRNA:21   UCCCCUAACUCCCCCUAAUUU   1   |*||||||||||||*|||||| targets:888   AUGGGAUUGAGGGGAAUUAAA   908 Target Full Sequence	1.5	Zea mays clone 305238 mRNA sequence	NA	coding protein	psRNATarget
XM_008662014.2	ncRNA:21   UCCCCUAACUCCCCCUAAUUU   1   |*||||||||||||*|||||| targets:1014   AUGGGAUUGAGGGGAAUUAAA   1034 Target Full Sequence	1.5	PREDICTED: Zea mays CASP-like protein 4B1 (LOC103639253), mRNA	NA	coding protein	psRNATarget
BT069589.2	ncRNA:21   UCCCCUAACUCCCCCUAAUUU   1   ||*|*|||||||||||||||| targets:935   AGAGAAUUGAGGGGGAUUAAA   955 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0174I14 mRNA, complete cds	NA	coding protein	psRNATarget
BT055781.1	ncRNA:21   UCCCCUAACUCCCCCUAAUUU   1   |||*||||||||*|||||||| targets:1555   AGGAGAUUGAGGAGGAUUAAA   1575 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0185O06 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001153140.1	ncRNA:21   UCCCCUAACUCCCCCUAAUUU   1   |||*||||||||*|||||||| targets:1555   AGGAGAUUGAGGAGGAUUAAA   1575 Target Full Sequence	2.5	Zea mays uncharacterized LOC100280209 (LOC100280209), mRNA	NA	coding protein	psRNATarget
BT061569.1	ncRNA:21   UCCCCUAACUCCCCCUAAUUU   1   |||*||||||||*|||||||| targets:1744   AGGAGAUUGAGGAGGAUUAAA   1764 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0159M03 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020548575.1	ncRNA:21   UCCCCUAACUCCCCCUAAUUU   1   *|*||||||||*||||||||| targets:2668   UGUGGAUUGAGAGGGAUUAAA   2688 Target Full Sequence	2.5	PREDICTED: Zea mays cysteine-rich receptor-like protein kinase 19 (LOC103647728), mRNA	NA	coding protein	psRNATarget
BT064784.1	ncRNA:21   UCCCCUAACUCCCCCUAAUUU   1   |**|||||||*|||||||||| targets:813   ACCGGAUUGAUGGGGAUUAAA   833 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0132E20 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008661613.2	ncRNA:21   UCCCCUAACUCCCCCUAAUUU   1   |**|||||||||*|||||||| targets:2983   AAAGGAUUGAGGAGGAUUAAA   3003 Target Full Sequence	2.5	PREDICTED: Zea mays two-component response regulator ORR25 (LOC103638799), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008661611.2	ncRNA:21   UCCCCUAACUCCCCCUAAUUU   1   |**|||||||||*|||||||| targets:2988   AAAGGAUUGAGGAGGAUUAAA   3008 Target Full Sequence	2.5	PREDICTED: Zea mays two-component response regulator ORR25 (LOC103638799), transcript variant X1, mRNA	NA	coding protein	psRNATarget