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BaseInfo

ncRNA ID	novel_zma_miR12543
Species	Zea mays
Class	miRNA
Genome position	Chr5:48530830-48530919 [+]
Reference genome	RefGen_v4
Source	SRR5105963
Length	24
Mature sequence(if miRNA)	67 - AGUACUCGGCAAAGAACUCUUUGC - 90
Stem-loop(if miRNA)	C   U    UU                 ---            A GC GAG GUUU  UUUGCCGAGUGCUUUUU   GACACUCGGCAA G || ||| ||||  |||||||||||||||||   |||||||||||| U CG UUC CAAG  AAACGGCUCAUGAAAAA   CUGUGAGCCGUU C   U   U    --                 AGC            U
Stem-loop sequence	GCCGAGUGUUUUUUUUGCCGAGUGCUUUUUGACACUCGGCAAAGUCUUUGCCGAGUGUCCGAAAAAAGUACUCGGCAAAGAACUCUUUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI407253.1	ncRNA:24   CGUUUCUCAAGAAACGGCUCAUGA   1   ||||||**|||||||||||||||| targets:26   GCAAAGCCUUCUUUGCCGAGUACU   49 Target Full Sequence	2.0	Sequence 5378 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239383.1	ncRNA:24   CGUUUCUCAAGAAACGGCUCAUGA   1   ||||||**|||||||||||||||| targets:26   GCAAAGCCUUCUUUGCCGAGUACU   49 Target Full Sequence	2.0	Sequence 5378 from Patent EP2985353	NA	coding protein	psRNATarget
JB167714.1	ncRNA:24   CGUUUCUCAAGAAACGGCUCAUGA   1   ||||||**|||||||||||||||| targets:26   GCAAAGCCUUCUUUGCCGAGUACU   49 Target Full Sequence	2.0	Sequence 5378 from Patent EP2559767	NA	coding protein	psRNATarget
JB167428.1	ncRNA:24   CGUUUCUCAAGAAACGGCUCAUGA   1   ||||||*|*||||||||||||||| targets:47   GCAAAGCGCUCUUUGCCGAGUACU   70 Target Full Sequence	2.0	Sequence 5092 from Patent EP2559767	NA	coding protein	psRNATarget
HI406967.1	ncRNA:24   CGUUUCUCAAGAAACGGCUCAUGA   1   ||||||*|*||||||||||||||| targets:47   GCAAAGCGCUCUUUGCCGAGUACU   70 Target Full Sequence	2.0	Sequence 5092 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239097.1	ncRNA:24   CGUUUCUCAAGAAACGGCUCAUGA   1   ||||||*|*||||||||||||||| targets:47   GCAAAGCGCUCUUUGCCGAGUACU   70 Target Full Sequence	2.0	Sequence 5092 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008645204.2	ncRNA:24   CGUUUCUCAAGAAACGGCUCAUGA   1   |||||*|||||||||||*|||||| targets:3198   GCAAAUAGUUCUUUGCCAAGUACU   3221 Target Full Sequence	2.5	PREDICTED: Zea mays putative protein of unknown function (DUF640) domain family protein (LOC100278742), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020553261.1	ncRNA:24   CGUUUCUCAAGAAACGGCUCAUGA   1   |||||*|||||||||||*|||||| targets:3205   GCAAAUAGUUCUUUGCCAAGUACU   3228 Target Full Sequence	2.5	PREDICTED: Zea mays putative protein of unknown function (DUF640) domain family protein (LOC100278742), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008645203.2	ncRNA:24   CGUUUCUCAAGAAACGGCUCAUGA   1   |||||*|||||||||||*|||||| targets:3266   GCAAAUAGUUCUUUGCCAAGUACU   3289 Target Full Sequence	2.5	PREDICTED: Zea mays putative protein of unknown function (DUF640) domain family protein (LOC100278742), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU974507.1	ncRNA:24   CGUUUCUC-AAGAAACGGCUCAUGA   1   |**||*||-|||||||||||||||| targets:438   GGUAACAGCUUCUUUGCCGAGUACU   462 Target Full Sequence	3.0	Zea mays clone 451014 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget