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BaseInfo

ncRNA ID	novel_zma_miR12531
Species	Zea mays
Class	miRNA
Genome position	Chr4:93702367-93702442 [-]
Reference genome	RefGen_v4
Source	SRR5105963
Length	23
Mature sequence(if miRNA)	1 - AUUUCUCCCCCAUGGAUCCCCUU - 23
Stem-loop(if miRNA)	--           A         UC C    U     A   GGGGAUCCAUG GGGAGGAAU  C UUGU AUUCA A   ||||||||||| |||||||||  | |||| |||||   CCCCUAGGUAC CCCUCUUUA  G AACG UAAGU A UU           C         GU A    U     U
Stem-loop sequence	GGGGAUCCAUGAGGGAGGAAUUCCCUUGUUAUUCAAAAUUGAAUUGCAAAGUGAUUUCUCCCCCAUGGAUCCCCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU974244.1	ncRNA:23   UUCCCCUAGGUACCCCCUCUUUA   1   *||||||||||||||||||=||| targets:419   UAGGGGAUCCAUGGGGGAGGAAU   441 Target Full Sequence	1.5	Zea mays clone 443590 SAUR1 - auxin-responsive SAUR family member mRNA, complete cds	NA	coding protein	psRNATarget
EU967725.1	ncRNA:23   UUCCCCUAGGUACCCCCUCUUUA   1   *||||||||||||||||||=||| targets:1061   UAGGGGAUCCAUGGGGGAGGAAU   1083 Target Full Sequence	1.5	Zea mays clone 305590 mRNA sequence	NA	coding protein	psRNATarget
NM_001148227.2	ncRNA:23   UUCCCCUAGGUACCCCCUCUUUA   1   *||||||||||||||||||=||| targets:246   UAGGGGAUCCAUGGGGGAGGAAU   268 Target Full Sequence	1.5	Zea mays 26S proteasome non-ATPase regulatory subunit 13 homolog A (LOC100273828), mRNA	NA	coding protein	psRNATarget
BT041878.2	ncRNA:23   UUCCCCUAGGUACCCCCUCUUUA   1   *||||||||||||||||||=||| targets:246   UAGGGGAUCCAUGGGGGAGGAAU   268 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0072B21 mRNA, complete cds	NA	coding protein	psRNATarget
BT087775.1	ncRNA:23   UUCCCCUAGGUACCCCCUCUUUA   1   *||||||||||||||||||=||| targets:253   UAGGGGAUCCAUGGGGGAGGAAU   275 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0195K06 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008662311.2	ncRNA:23   UUCCCCUAGGUACCCCCUCUUUA   1   *||||||||||||||||||=||| targets:1022   UAGGGGAUCCAUGGGGGAGGAAU   1044 Target Full Sequence	1.5	PREDICTED: Zea mays EPIDERMAL PATTERNING FACTOR-like protein 4 (LOC103639579), mRNA	NA	coding protein	psRNATarget
LQ240751.1	ncRNA:20   CCCUAGGUACCCCCUCUUUA   1   ||||||||||||||||=||| targets:1   GGGAUCCAUGGGGGAGGAAU   20 Target Full Sequence	1.5	Sequence 6746 from Patent EP2985353	NA	coding protein	psRNATarget
JB169720.1	ncRNA:20   CCCUAGGUACCCCCUCUUUA   1   ||||||||||||||||=||| targets:1   GGGAUCCAUGGGGGAGGAAU   20 Target Full Sequence	1.5	Sequence 7384 from Patent EP2559767	NA	coding protein	psRNATarget
HI409259.1	ncRNA:20   CCCUAGGUACCCCCUCUUUA   1   ||||||||||||||||=||| targets:1   GGGAUCCAUGGGGGAGGAAU   20 Target Full Sequence	1.5	Sequence 7384 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241389.1	ncRNA:20   CCCUAGGUACCCCCUCUUUA   1   ||||||||||||||||=||| targets:1   GGGAUCCAUGGGGGAGGAAU   20 Target Full Sequence	1.5	Sequence 7384 from Patent EP2985353	NA	coding protein	psRNATarget
HI408621.1	ncRNA:20   CCCUAGGUACCCCCUCUUUA   1   ||||||||||||||||=||| targets:1   GGGAUCCAUGGGGGAGGAAU   20 Target Full Sequence	1.5	Sequence 6746 from Patent EP2074227	NA	coding protein	psRNATarget
JB169082.1	ncRNA:20   CCCUAGGUACCCCCUCUUUA   1   ||||||||||||||||=||| targets:1   GGGAUCCAUGGGGGAGGAAU   20 Target Full Sequence	1.5	Sequence 6746 from Patent EP2559767	NA	coding protein	psRNATarget
HI409814.1	ncRNA:20   CCCUAGGUACCCCCUCUUUA   1   *||||||||||||||||||| targets:1   AGGAUCCAUGGGGGAGAAAU   20 Target Full Sequence	0.0	Sequence 7939 from Patent EP2074227	NA	coding protein	psRNATarget
JB170275.1	ncRNA:20   CCCUAGGUACCCCCUCUUUA   1   *||||||||||||||||||| targets:1   AGGAUCCAUGGGGGAGAAAU   20 Target Full Sequence	0.0	Sequence 7939 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241944.1	ncRNA:20   CCCUAGGUACCCCCUCUUUA   1   *||||||||||||||||||| targets:1   AGGAUCCAUGGGGGAGAAAU   20 Target Full Sequence	0.0	Sequence 7939 from Patent EP2985353	NA	coding protein	psRNATarget