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BaseInfo

ncRNA ID novel_zma_miR12528
Species Zea mays
Class miRNA
Genome position Chr4:228957331-228957527 [-]
Reference genome RefGen_v4
Source SRR5105963
Length 24
Mature sequence(if miRNA) 1 - ACAACACUCGGCAAAGGUAACUCC - 24
Stem-loop(if miRNA) ----UGU              AA    --CCU     C          GCA  -     C           G                 A   G  A     A
       UUUUUGCCGAGUGU  UGUC     GACAC CGGCAAAGAA   CG CUUUG CGAGUGCCGCU GGGACACUCGGCAAAGA CCU GC UGGGG C
       ||||||||||||||  ||||     ||||| ||||||||||   || ||||| ||||||||||| ||||||||||||||||| ||| || ||||| C
       GGAAACGGCUCACA  ACAG     CUGUG GCCGUUUCUU   GU GAAAC GCUCACGGUGG UCCUGUGAGCCGUUUCU GGG UG GUCUC C
CCUCAAU              --    CCAGU     A          -AG  A     A           A                 -   G  -     U
Stem-loop sequence UGUUUUUUGCCGAGUGUAAUGUCCCUGACACCCGGCAAAGAAGCACGCUUUGCCGAGUGCCGCUGGGGACACUCGGCAAAGAACCUGGCAUGGGGACCCUCUCUGGUGGGGUCUUUGCCGAGUGUCCUAGGUGGCACUCGACAAAGAUGGAUUCUUUGCCGAGUGUCUGACCGACAACACUCGGCAAAGGUAACUCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008645204.2
ncRNA:24   CCUCAAUGGAAACGGCUCACAACA   1
  **|*|||||||||||*|||||||*
targets:4309   UAAAUUACCUUUGCCUAGUGUUGG   4332

2.5 PREDICTED: Zea mays putative protein of unknown function (DUF640) domain family protein (LOC100278742), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020553261.1
ncRNA:24   CCUCAAUGGAAACGGCUCACAACA   1
  **|*|||||||||||*|||||||*
targets:4316   UAAAUUACCUUUGCCUAGUGUUGG   4339

2.5 PREDICTED: Zea mays putative protein of unknown function (DUF640) domain family protein (LOC100278742), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008645203.2
ncRNA:24   CCUCAAUGGAAACGGCUCACAACA   1
  **|*|||||||||||*|||||||*
targets:4377   UAAAUUACCUUUGCCUAGUGUUGG   4400

2.5 PREDICTED: Zea mays putative protein of unknown function (DUF640) domain family protein (LOC100278742), transcript variant X1, mRNA NA coding protein psRNATarget
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