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BaseInfo

ncRNA ID	novel_zma_miR12519
Species	Zea mays
Class	miRNA
Genome position	Chr2:176332942-176333058 [+]
Reference genome	RefGen_v4
Source	SRR5105963
Length	20
Mature sequence(if miRNA)	98 - AGAAUAAAAUUGAGGGACUA - 117
Stem-loop(if miRNA)	--       C C       C        UC               G               GUCCCUU A UUUAUUC AUUUUAGU  AUAAAUUGUUAAAUA GGAAACUAAAAUA   ||||||| | ||||||| ||||||||  ||||||||||||||| ||||||||||||A   CAGGGAG U AAAUAAG UAAAAUCA  UAUUUAAUGAUUUAU UCUUUGAUUUUGA AU       U A       A        GA               A
Stem-loop sequence	GUCCCUUCACUUUAUUCCAUUUUAGUUCAUAAAUUGUUAAAUAGGGAAACUAAAAUAAAGUUUUAGUUUCUAUAUUUAGUAAUUUAUAGACUAAAAUAGAAUAAAAUUGAGGGACUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008647122.2	ncRNA:20   AUCAGGGAGUUAAAAUAAGA   1   |||||||||*|||||||||* targets:2988   UAGUCCCUCCAUUUUAUUCC   3007 Target Full Sequence	2.5	PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008647123.2	ncRNA:20   AUCAGGGAGUUAAAAUAAGA   1   |||||||||*|||||||||* targets:2599   UAGUCCCUCCAUUUUAUUCC   2618 Target Full Sequence	2.5	PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008651702.2	ncRNA:20   AUCAGGGAGUUAAAAUAAGA   1   |||||||||*|||||||||* targets:481   UAGUCCCUCCAUUUUAUUCC   500 Target Full Sequence	2.5	PREDICTED: Zea mays type IV inositol polyphosphate 5-phosphatase 3 (LOC103630655), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT019141.1	ncRNA:20   AUCAGGGAGUUAAAAUAAGA   1   |||||||||*|||||||||* targets:293   UAGUCCCUCCAUUUUAUUCC   312 Target Full Sequence	2.5	Zea mays clone Contig786.F mRNA sequence	NA	coding protein	psRNATarget
LQ238843.1	ncRNA:20   AUCAGGGAGUUAAAAUAAGA   1   |||||||||*|||||||||* targets:168   UAGUCCCUCCAUUUUAUUCC   187 Target Full Sequence	2.5	Sequence 4838 from Patent EP2985353	NA	coding protein	psRNATarget
JB167174.1	ncRNA:20   AUCAGGGAGUUAAAAUAAGA   1   |||||||||*|||||||||* targets:168   UAGUCCCUCCAUUUUAUUCC   187 Target Full Sequence	2.5	Sequence 4838 from Patent EP2559767	NA	coding protein	psRNATarget
HI406713.1	ncRNA:20   AUCAGGGAGUUAAAAUAAGA   1   |||||||||*|||||||||* targets:168   UAGUCCCUCCAUUUUAUUCC   187 Target Full Sequence	2.5	Sequence 4838 from Patent EP2074227	NA	coding protein	psRNATarget
HI406419.1	ncRNA:20   AUCAGGGAGUUAAAAUAAGA   1   |||||||||*|||||||||* targets:77   UAGUCCCUCCAUUUUAUUCC   96 Target Full Sequence	2.5	Sequence 4544 from Patent EP2074227	NA	coding protein	psRNATarget
JB166880.1	ncRNA:20   AUCAGGGAGUUAAAAUAAGA   1   |||||||||*|||||||||* targets:77   UAGUCCCUCCAUUUUAUUCC   96 Target Full Sequence	2.5	Sequence 4544 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238549.1	ncRNA:20   AUCAGGGAGUUAAAAUAAGA   1   |||||||||*|||||||||* targets:77   UAGUCCCUCCAUUUUAUUCC   96 Target Full Sequence	2.5	Sequence 4544 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008678837.2	ncRNA:20   AUCAGGGAGUUAAAAUAAGA   1   ||||||*||*|||||||||| targets:2412   UAGUCCAUCUAUUUUAUUCU   2431 Target Full Sequence	2.5	PREDICTED: Zea mays Outer envelope protein 64 chloroplastic (pco120561), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008678835.2	ncRNA:20   AUCAGGGAGUUAAAAUAAGA   1   ||||||*||*|||||||||| targets:2401   UAGUCCAUCUAUUUUAUUCU   2420 Target Full Sequence	2.5	PREDICTED: Zea mays Outer envelope protein 64 chloroplastic (pco120561), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU976720.1	ncRNA:20   AUCAGGGAGUUAAAAUAAGA   1   ||||||*||*|||||||||| targets:2354   UAGUCCAUCUAUUUUAUUCU   2373 Target Full Sequence	2.5	Zea mays clone 988464 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152135.1	ncRNA:20   AUCAGGGAGUUAAAAUAAGA   1   ||||||*||*|||||||||| targets:2354   UAGUCCAUCUAUUUUAUUCU   2373 Target Full Sequence	2.5	Zea mays Outer envelope protein 64 chloroplastic (pco120561), mRNA	NA	coding protein	psRNATarget
XM_020551472.1	ncRNA:20   AUCAGGGAGUUAAAAUAAGA   1   ||||||*||*|||||||||| targets:2228   UAGUCCAUCUAUUUUAUUCU   2247 Target Full Sequence	2.5	PREDICTED: Zea mays Outer envelope protein 64 chloroplastic (pco120561), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020551471.1	ncRNA:20   AUCAGGGAGUUAAAAUAAGA   1   ||||||*||*|||||||||| targets:2226   UAGUCCAUCUAUUUUAUUCU   2245 Target Full Sequence	2.5	PREDICTED: Zea mays Outer envelope protein 64 chloroplastic (pco120561), transcript variant X3, mRNA	NA	coding protein	psRNATarget
AY104339.1	ncRNA:20   AUCAGGGAGUUAAAAUAAGA   1   ||||||*||*|||||||||| targets:1703   UAGUCCAUCUAUUUUAUUCU   1722 Target Full Sequence	2.5	Zea mays PCO120561 mRNA sequence	NA	coding protein	psRNATarget