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BaseInfo

ncRNA ID novel_zma_miR12508
Species Zea mays
Class miRNA
Genome position Chr1:157343365-157343466 [-]
Reference genome RefGen_v4
Source SRR1997865
Length 24
Mature sequence(if miRNA) 1 - UCGGCAAAGAAUAUAGCACUCGGC - 24
Stem-loop(if miRNA) --        ---      UA     G     -UUG  U              A
  CGAGUGUU   UUCUUU  CCGAG GUUUU    UG GGCACUCGGCAAAG G
  ||||||||   ||||||  ||||| |||||    || ||||||||||||||
  GCUCACGA   AAGAAA  GGCUU CAAAA    GC CCGUGAGCCGUUUC C
CG        UAU      -C     A     UAAA  -              U
Stem-loop sequence CGAGUGUUUUCUUUUACCGAGGGUUUUUUGUGUGGCACUCGGCAAAGAGCUCUUUGCCGAGUGCCCGAAAUAAAACAUUCGGCAAAGAAUAUAGCACUCGGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT042352.1
ncRNA:24   CGGCUCACGAUAUAAGAAACGGCU   1
  ||||||||=*||||||||||||||
targets:1211   GCCGAGUGUCAUAUUCUUUGCCGA   1234

2.0 Zea mays full-length cDNA clone ZM_BFb0207J05 mRNA, complete cds NA coding protein psRNATarget
NM_001148473.2
ncRNA:24   CGGCUCACGAUAUAAGAAACGGCU   1
  ||||||||=*||||||||||||||
targets:1261   GCCGAGUGUCAUAUUCUUUGCCGA   1284

2.0 Zea mays Protein CHLORORESPIRATORY REDUCTION 6 chloroplastic (si707021b11), mRNA NA coding protein psRNATarget