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BaseInfo

ncRNA ID	novel_zma_miR12506
Species	Zea mays
Class	miRNA
Genome position	Chr1:79864021-79864134 [-]
Reference genome	RefGen_v4
Source	SRR5105963
Length	24
Mature sequence(if miRNA)	1 - CUGGCACUCGGCAAAGAACCUGAC - 24
Stem-loop(if miRNA)	--G   GG                U     A       A       C A     U G    AGG  CUUUGCCGAGUGUCAG GCCAU GCACUCG CAAAGAA C AUACC G G    |||  |||||||||||||||| ||||| ||||||| ||||||| | ||||| |    UCC  GAAACGGCUCACGGUC CGGUG UGUGAGC GUUUCUU G UAUGG C C CAG   AA                C     G       C       C A     C A
Stem-loop sequence	GAGGGGCUUUGCCGAGUGUCAGUGCCAUAGCACUCGACAAAGAACCAAUACCUGGGCACCGGUAUAGCUUCUUUGCCGAGUGUGGUGGCCCUGGCACUCGGCAAAGAACCUGAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI409785.1	ncRNA:24   CAGUCCAAGAAACGGCUCACGGUC   1   ||*||||||||||||||||||=|* targets:76   GUGAGGUUCUUUGCCGAGUGCUAC   99 Target Full Sequence	2.5	Sequence 7910 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241915.1	ncRNA:24   CAGUCCAAGAAACGGCUCACGGUC   1   ||*||||||||||||||||||=|* targets:76   GUGAGGUUCUUUGCCGAGUGCUAC   99 Target Full Sequence	2.5	Sequence 7910 from Patent EP2985353	NA	coding protein	psRNATarget
JB170246.1	ncRNA:24   CAGUCCAAGAAACGGCUCACGGUC   1   ||*||||||||||||||||||=|* targets:76   GUGAGGUUCUUUGCCGAGUGCUAC   99 Target Full Sequence	2.5	Sequence 7910 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239157.1	ncRNA:24   CAGU-CCAAGAAACGGCUCACGGUC   1   |||*-|||||||||||||||||=|* targets:48   GUCUUGGUUCUUUGCCGAGUGCUAU   72 Target Full Sequence	2.5	Sequence 5152 from Patent EP2985353	NA	coding protein	psRNATarget
JB167488.1	ncRNA:24   CAGU-CCAAGAAACGGCUCACGGUC   1   |||*-|||||||||||||||||=|* targets:48   GUCUUGGUUCUUUGCCGAGUGCUAU   72 Target Full Sequence	2.5	Sequence 5152 from Patent EP2559767	NA	coding protein	psRNATarget
HI407027.1	ncRNA:24   CAGU-CCAAGAAACGGCUCACGGUC   1   |||*-|||||||||||||||||=|* targets:48   GUCUUGGUUCUUUGCCGAGUGCUAU   72 Target Full Sequence	2.5	Sequence 5152 from Patent EP2074227	NA	coding protein	psRNATarget
EU962802.1	ncRNA:24   CAGUCC-AAGAAACGGCUCACGGUC   1   ***|||-|||||||||||||||||* targets:1095   AAGAGGCUUCUUUGCCGAGUGCCAA   1119 Target Full Sequence	3.0	Zea mays clone 245661 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT054268.1	ncRNA:24   CAGUCCAAGAAACGGCUCACGGUC   1   **=|**||||||||||||||||*| targets:2158   AAUAACUUCUUUGCCGAGUGCCCG   2181 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0206G23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152461.1	ncRNA:24   CAGUCCAAGAAACGGCUCACGGUC   1   **=|**||||||||||||||||*| targets:2158   AAUAACUUCUUUGCCGAGUGCCCG   2181 Target Full Sequence	2.5	Zea mays uncharacterized LOC100279456 (IDP836), mRNA	NA	coding protein	psRNATarget
LQ238769.1	ncRNA:24   CAGUCCAAGAAACGGCUCACGGUC   1   ||--|*|||||||||||||||||* targets:165   GU--GCUUCUUUGCCGAGUGCCAU   186 Target Full Sequence	2.0	Sequence 4764 from Patent EP2985353	NA	coding protein	psRNATarget
JB167100.1	ncRNA:24   CAGUCCAAGAAACGGCUCACGGUC   1   ||--|*|||||||||||||||||* targets:165   GU--GCUUCUUUGCCGAGUGCCAU   186 Target Full Sequence	2.0	Sequence 4764 from Patent EP2559767	NA	coding protein	psRNATarget
HI406639.1	ncRNA:24   CAGUCCAAGAAACGGCUCACGGUC   1   ||--|*|||||||||||||||||* targets:165   GU--GCUUCUUUGCCGAGUGCCAU   186 Target Full Sequence	2.0	Sequence 4764 from Patent EP2074227	NA	coding protein	psRNATarget
JB170157.1	ncRNA:24   CAGUCCAAGAAACGGCUCACGGUC   1   ***||**||||||||||||||||| targets:37   AGAAGCCUCUUUGCCGAGUGCCAG   60 Target Full Sequence	2.0	Sequence 7821 from Patent EP2559767	NA	coding protein	psRNATarget
HI409696.1	ncRNA:24   CAGUCCAAGAAACGGCUCACGGUC   1   ***||**||||||||||||||||| targets:37   AGAAGCCUCUUUGCCGAGUGCCAG   60 Target Full Sequence	2.0	Sequence 7821 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241826.1	ncRNA:24   CAGUCCAAGAAACGGCUCACGGUC   1   ***||**||||||||||||||||| targets:37   AGAAGCCUCUUUGCCGAGUGCCAG   60 Target Full Sequence	2.0	Sequence 7821 from Patent EP2985353	NA	coding protein	psRNATarget
EU957132.1	ncRNA:24   CAGUCCAAGAAACGGCUCACGGUC   1   |*|=*|||=||||||*|||||||| targets:1859   GGCGUGUUUUUUGCCAAGUGCCAG   1882 Target Full Sequence	2.5	Zea mays clone 1583769 mRNA sequence	NA	coding protein	psRNATarget