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BaseInfo

ncRNA ID novel_zma_miR12503
Species Zea mays
Class miRNA
Genome position Chr1:163050277-163050452 [-]
Reference genome RefGen_v4
Source SRR1997865
Length 24
Mature sequence(if miRNA) 153 - UCCACUGACGGUUAUCUUAACACA - 176
Stem-loop(if miRNA) --       A                                                    AUCU    -                 U
  UCCACUG CGGUUAUCUUAACACAACCGCCAGUGGAAAUAGGAUGUUUCCACUGGCGGUU    UAAC UUAACCGCCAGUGGAAA C
  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    |||| |||||||||||||||||
  AGGUGAC GCCAAUAGAAUUGUGUUGGCGGUCACCUUUAUCCUACAAAGGUGACCGCCAA    AUUG GGUUGGCGGUCACUUUU A
AA       C                                                    -CAC    U                 A
Stem-loop sequence UCCACUGACGGUUAUCUUAACACAACCGCCAGUGGAAAUAGGAUGUUUCCACUGGCGGUUAUCUUAACUUAACCGCCAGUGGAAAUCAAUUUUCACUGGCGGUUGGUGUUACACAACCGCCAGUGGAAACAUCCUAUUUCCACUGGCGGUUGUGUUAAGAUAACCGCCAGUGGAAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT033892.1
ncRNA:24   ACACAAUUCUAUUGGCAGUCACCU   1
  ||*|||||||*||||||||*||||
targets:696   UGCGUUAAGAGAACCGUCAAUGGA   719

2.5 Zea mays full-length cDNA clone ZM_BFc0124I12 mRNA, complete cds NA coding protein psRNATarget
NM_001137136.2
ncRNA:24   ACACAAUUCUAUUGGCAGUCACCU   1
  ||*|||||||*||||||||*||||
targets:1361   UGCGUUAAGAGAACCGUCAAUGGA   1384

2.5 Zea mays hypothetical protein (LOC100191707), mRNA NA coding protein psRNATarget