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BaseInfo

ncRNA ID	novel_zma_miR12501
Species	Zea mays
Class	miRNA
Genome position	Chr1:205987089-205987163 [-]
Reference genome	RefGen_v4
Source	SRR5105963
Length	24
Mature sequence(if miRNA)	1 - AAGGAACCGCCUGUAGAAAUACGA - 24
Stem-loop(if miRNA)	--                              C   A   GUAUUUCUACAGGCGGUUCCUUAAGAAAAU GUC C   |||||||||||||||||||||||||||||| ||| A   CAUAAAGAUGUCCGCCAAGGAAUUCUUUUG CGG A AG                              A   A
Stem-loop sequence	GUAUUUCUACAGGCGGUUCCUUAAGAAAAUCGUCACAAAGGCAGUUUUCUUAAGGAACCGCCUGUAGAAAUACGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163445.1	ncRNA:24   AGCAUAAAGAUGUCCGCCAAGGAA   1   ||*||||||||||||||||||||| targets:32   UCAUAUUUCUACAGGCGGUUCCUU   55 Target Full Sequence	0.0	Sequence 1109 from Patent EP2559767	NA	coding protein	psRNATarget
HI402984.1	ncRNA:24   AGCAUAAAGAUGUCCGCCAAGGAA   1   ||*||||||||||||||||||||| targets:32   UCAUAUUUCUACAGGCGGUUCCUU   55 Target Full Sequence	0.0	Sequence 1109 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235114.1	ncRNA:24   AGCAUAAAGAUGUCCGCCAAGGAA   1   ||*||||||||||||||||||||| targets:32   UCAUAUUUCUACAGGCGGUUCCUU   55 Target Full Sequence	0.0	Sequence 1109 from Patent EP2985353	NA	coding protein	psRNATarget
JB163447.1	ncRNA:24   AGCAUAAAGAUGUCCGCCAAGGAA   1   ||||||||=||*|||||||||||| targets:32   UCGUAUUUUUAGAGGCGGUUCCUU   55 Target Full Sequence	2.5	Sequence 1111 from Patent EP2559767	NA	coding protein	psRNATarget
HI402986.1	ncRNA:24   AGCAUAAAGAUGUCCGCCAAGGAA   1   ||||||||=||*|||||||||||| targets:32   UCGUAUUUUUAGAGGCGGUUCCUU   55 Target Full Sequence	2.5	Sequence 1111 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235116.1	ncRNA:24   AGCAUAAAGAUGUCCGCCAAGGAA   1   ||||||||=||*|||||||||||| targets:32   UCGUAUUUUUAGAGGCGGUUCCUU   55 Target Full Sequence	2.5	Sequence 1111 from Patent EP2985353	NA	coding protein	psRNATarget
EU943186.1	ncRNA:24   AGC-AUAAAGAUGUCCGCCAAGGAA   1   |=|-|||||||||||||||||=||| targets:1918   UUGCUAUUUCUACAGGCGGUUUCUU   1942 Target Full Sequence	1.5	Zea mays clone 1582065 mRNA sequence	NA	coding protein	psRNATarget
LQ239232.1	ncRNA:24   AGCAUAAAGAUGUCCGCCAAGGAA   1   |||-|||||||||*|||||||||| targets:9   UCG-AUUUCUACAUGCGGUUCCUU   31 Target Full Sequence	1.5	Sequence 5227 from Patent EP2985353	NA	coding protein	psRNATarget
JB167563.1	ncRNA:24   AGCAUAAAGAUGUCCGCCAAGGAA   1   |||-|||||||||*|||||||||| targets:9   UCG-AUUUCUACAUGCGGUUCCUU   31 Target Full Sequence	1.5	Sequence 5227 from Patent EP2559767	NA	coding protein	psRNATarget
HI407102.1	ncRNA:24   AGCAUAAAGAUGUCCGCCAAGGAA   1   |||-|||||||||*|||||||||| targets:9   UCG-AUUUCUACAUGCGGUUCCUU   31 Target Full Sequence	1.5	Sequence 5227 from Patent EP2074227	NA	coding protein	psRNATarget
JB163558.1	ncRNA:24   AGCAUAAAGAUGUCCGCCAAGGAA   1   |=|-|||||||||*|||||||||| targets:50   UUG-AUUUCUACAUGCGGUUCCUU   72 Target Full Sequence	1.5	Sequence 1222 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235227.1	ncRNA:24   AGCAUAAAGAUGUCCGCCAAGGAA   1   |=|-|||||||||*|||||||||| targets:50   UUG-AUUUCUACAUGCGGUUCCUU   72 Target Full Sequence	1.5	Sequence 1222 from Patent EP2985353	NA	coding protein	psRNATarget
HI403097.1	ncRNA:24   AGCAUAAAGAUGUCCGCCAAGGAA   1   |=|-|||||||||*|||||||||| targets:50   UUG-AUUUCUACAUGCGGUUCCUU   72 Target Full Sequence	1.5	Sequence 1222 from Patent EP2074227	NA	coding protein	psRNATarget