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BaseInfo

ncRNA ID novel_zma_miR12498
Species Zea mays
Class miRNA
Genome position Chr10:33316696-33316814 [-]
Reference genome RefGen_v4
Source SRR5105961
Length 22
Mature sequence(if miRNA) 98 - UUGGAGAAAUUUGUGAGACACU - 119
Stem-loop(if miRNA) --         U     A             C            --UC     U    - U
  UUGGAGAAA UUGUG GACACUAUGUGUA AAACCUAAGAGA    CACAU GAAA C C
  ||||||||| ||||| ||||||||||||| ||||||||||||    ||||| |||| | U
  AACCUCUUU AACAC CUGUGAUACACAU UUUGGAUUCUCU    GUGUA CUUU G A
CA         C     C             C            UGAU     -    A U
Stem-loop sequence UUGGAGAAAUUUGUGAGACACUAUGUGUACAAACCUAAGAGAUCCACAUUGAAACUCUAUGAUUUCAUGUGUAGUUCUCUUAGGUUUCUACACAUAGUGUCCCACAACUUUCUCCAAAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB163683.1
ncRNA:22   UCACAGAGUGUUUAAAGAGGUU   1
  ||||||||||||*|||||||||
targets:158   AGUGUCUCACAACUUUCUCCAA   179

1.5 Sequence 1347 from Patent EP2559767 NA coding protein psRNATarget
LQ235352.1
ncRNA:22   UCACAGAGUGUUUAAAGAGGUU   1
  ||||||||||||*|||||||||
targets:158   AGUGUCUCACAACUUUCUCCAA   179

1.5 Sequence 1347 from Patent EP2985353 NA coding protein psRNATarget
HI403222.1
ncRNA:22   UCACAGAGUGUUUAAAGAGGUU   1
  ||||||||||||*|||||||||
targets:158   AGUGUCUCACAACUUUCUCCAA   179

1.5 Sequence 1347 from Patent EP2074227 NA coding protein psRNATarget