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BaseInfo

ncRNA ID	novel_zma_miR12497
Species	Zea mays
Class	miRNA
Genome position	Chr1:165929605-165929676 [-]
Reference genome	RefGen_v4
Source	SRR1997865
Length	24
Mature sequence(if miRNA)	1 - AAAAGUACUCGGCAAAGAAGUCAU - 24
Stem-loop(if miRNA)	--      UA             ----GG U      CG   GACUUU  UUUGUCGAGUACU      C GACACU  A   ||||||  |||||||||||||      | ||||||   CUGAAG  AAACGGCUCAUGA      G CUGUGA  C UA      --             AAAAUA C      AA
Stem-loop sequence	GACUUUUAUUUGUCGAGUACUGGCUGACACUCGACAAAGUGUCCGAUAAAAAGUACUCGGCAAAGAAGUCAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ239383.1	ncRNA:24   UACUGAAGAAACGGCUCAUGAAAA   1   |*|*|||||||||||||||||||| targets:29   AAGCCUUCUUUGCCGAGUACUUUU   52 Target Full Sequence	0.0	Sequence 5378 from Patent EP2985353	NA	coding protein	psRNATarget
HI407253.1	ncRNA:24   UACUGAAGAAACGGCUCAUGAAAA   1   |*|*|||||||||||||||||||| targets:29   AAGCCUUCUUUGCCGAGUACUUUU   52 Target Full Sequence	0.0	Sequence 5378 from Patent EP2074227	NA	coding protein	psRNATarget
JB167714.1	ncRNA:24   UACUGAAGAAACGGCUCAUGAAAA   1   |*|*|||||||||||||||||||| targets:29   AAGCCUUCUUUGCCGAGUACUUUU   52 Target Full Sequence	0.0	Sequence 5378 from Patent EP2559767	NA	coding protein	psRNATarget
EU974507.1	ncRNA:24   UACUGAAGAAACGGCUCAUGAAAA   1   |**=|||||||||||||||||||| targets:442   ACAGCUUCUUUGCCGAGUACUUUU   465 Target Full Sequence	0.0	Zea mays clone 451014 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
LQ238902.1	ncRNA:24   UACUGAAGAAACGGCUCAUGAAAA   1   *||*|||||||||||||||||*|* targets:95   CUGCCUUCUUUGCCGAGUACUAUG   118 Target Full Sequence	2.5	Sequence 4897 from Patent EP2985353	NA	coding protein	psRNATarget
HI406772.1	ncRNA:24   UACUGAAGAAACGGCUCAUGAAAA   1   *||*|||||||||||||||||*|* targets:95   CUGCCUUCUUUGCCGAGUACUAUG   118 Target Full Sequence	2.5	Sequence 4897 from Patent EP2074227	NA	coding protein	psRNATarget
JB167233.1	ncRNA:24   UACUGAAGAAACGGCUCAUGAAAA   1   *||*|||||||||||||||||*|* targets:95   CUGCCUUCUUUGCCGAGUACUAUG   118 Target Full Sequence	2.5	Sequence 4897 from Patent EP2559767	NA	coding protein	psRNATarget
EU957858.1	ncRNA:24   UACUGAAGAAACGGCUCAUGAAAA   1   |*|=|||*|||*|||||||||||| targets:1236   ACGGCUUAUUUACCGAGUACUUUU   1259 Target Full Sequence	2.5	Zea mays clone 1627310 mRNA sequence	NA	coding protein	psRNATarget
XM_008645204.2	ncRNA:24   UACUGAAGAAACGGCUCAUGAAAA   1   ||-|*|||||||||*||||||||| targets:3202   AU-AGUUCUUUGCCAAGUACUUUU   3224 Target Full Sequence	1.5	PREDICTED: Zea mays putative protein of unknown function (DUF640) domain family protein (LOC100278742), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020553261.1	ncRNA:24   UACUGAAGAAACGGCUCAUGAAAA   1   ||-|*|||||||||*||||||||| targets:3209   AU-AGUUCUUUGCCAAGUACUUUU   3231 Target Full Sequence	1.5	PREDICTED: Zea mays putative protein of unknown function (DUF640) domain family protein (LOC100278742), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008645203.2	ncRNA:24   UACUGAAGAAACGGCUCAUGAAAA   1   ||-|*|||||||||*||||||||| targets:3270   AU-AGUUCUUUGCCAAGUACUUUU   3292 Target Full Sequence	1.5	PREDICTED: Zea mays putative protein of unknown function (DUF640) domain family protein (LOC100278742), transcript variant X1, mRNA	NA	coding protein	psRNATarget