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BaseInfo

ncRNA ID	novel_zma_miR12488
Species	Zea mays
Class	miRNA
Genome position	Chr10:55985006-55985081 [-]
Reference genome	RefGen_v4
Source	SRR5105961
Length	21
Mature sequence(if miRNA)	56 - UGGAGAUUGAGAGGGAUUGAA - 76
Stem-loop(if miRNA)	--   A       A       AAUCCCCUACAAGUCAA   UGG GAUUGAG GGGAUUG                 A   ||| ||||||| |||||||   ACC CUAACUC CCCUAAC                 A GU   C       C       CUCACCUAACUCCUCCU
Stem-loop sequence	UGGAGAUUGAGAGGGAUUGAAUCCCCUACAAGUCAAAAUCCUCCUCAAUCCACUCCAAUCCCCCUCAAUCCCCAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020546944.1	ncRNA:21   AAGUUAGGGAGAGUUAGAGGU   1   |||||||||||||||||*||| targets:661   UUCAAUCCCUCUCAAUCCCCA   681 Target Full Sequence	1.5	PREDICTED: Zea mays cytochrome b5-like (LOC109943550), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020546943.1	ncRNA:21   AAGUUAGGGAGAGUUAGAGGU   1   |||||||||||||||||*||| targets:718   UUCAAUCCCUCUCAAUCCCCA   738 Target Full Sequence	1.5	PREDICTED: Zea mays cytochrome b5-like (LOC109943550), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT054307.1	ncRNA:21   AAGUUAGGGAGAGUUAGAGGU   1   |*|||||=||||||||||||* targets:1077   UCCAAUCUCUCUCAAUCUCCU   1097 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0234I14 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152477.1	ncRNA:21   AAGUUAGGGAGAGUUAGAGGU   1   |*|||||=||||||||||||* targets:1077   UCCAAUCUCUCUCAAUCUCCU   1097 Target Full Sequence	2.0	Zea mays Putative SAC3/GANP family protein (LOC100279473), mRNA	NA	coding protein	psRNATarget
BT062162.1	ncRNA:21   AAGUUAGGGAGAGUUAGAGGU   1   |||||*|=||||||||||||* targets:35   UUCAACCUCUCUCAAUCUCCU   55 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0222D22 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008649700.2	ncRNA:21   AAGUUAGGGAGAGUUAGAGGU   1   |||||*|=||||||||||||* targets:105   UUCAACCUCUCUCAAUCUCCU   125 Target Full Sequence	3.0	PREDICTED: Zea mays zinc transporter 4 (LOC100284121), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020538905.1	ncRNA:21   AAGUUAGGGAGAGUUAGAGGU   1   |*|||||=||||||||||||* targets:3846   UCCAAUCUCUCUCAAUCUCCU   3866 Target Full Sequence	2.0	PREDICTED: Zea mays Putative SAC3/GANP family protein (LOC100279473), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020538904.1	ncRNA:21   AAGUUAGGGAGAGUUAGAGGU   1   |*|||||=||||||||||||* targets:3849   UCCAAUCUCUCUCAAUCUCCU   3869 Target Full Sequence	2.0	PREDICTED: Zea mays Putative SAC3/GANP family protein (LOC100279473), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008649499.2	ncRNA:21   AAGUUAGGGAGAGUUAGAGGU   1   |*|||||=||||||||||||* targets:3938   UCCAAUCUCUCUCAAUCUCCU   3958 Target Full Sequence	2.0	PREDICTED: Zea mays Putative SAC3/GANP family protein (LOC100279473), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008649500.2	ncRNA:21   AAGUUAGGGAGAGUUAGAGGU   1   |*|||||=||||||||||||* targets:3938   UCCAAUCUCUCUCAAUCUCCU   3958 Target Full Sequence	2.0	PREDICTED: Zea mays Putative SAC3/GANP family protein (LOC100279473), transcript variant X2, mRNA	NA	coding protein	psRNATarget