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BaseInfo

ncRNA ID	novel_zma_miR12478
Species	Zea mays
Class	miRNA
Genome position	Chr3:114028438-114028577 [-]
Reference genome	RefGen_v4
Source	SRR5105961
Length	23
Mature sequence(if miRNA)	118 - AACCAGACUGUUUGUAGCCCCUC - 140
Stem-loop(if miRNA)	--      AC              C               GA      C  C   U   -CCAA     GU   AACCAG  UGUUUGUAGCCCCU ACAAAAAAGAGGAUA  UCCUAC UG AGG CCA     AUAAC  U   ||||||  |||||||||||||| |||||||||||||||  |||||| || ||| |||     |||||   UUGGUC  ACAAACGUCGGGGA UGUUUUUUCUCCUAU  GGGGUG AC UCC GGU     UGUUG  U GU      CA              A               AC      U  A   -   UAUUG     AU
Stem-loop sequence	AACCAGACUGUUUGUAGCCCCUCACAAAAAAGAGGAUAGAUCCUACCUGCAGGUCCACCAAAUAACGUUUUAGUUGUGUUAUUGGCCUACAUGUGGGGCAUAUCCUCUUUUUUGUAAGGGGCUGCAAACAACCUGGUUUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU968721.1	ncRNA:23   CUCCCCGAUGUUUGUCAGACCAA   1   ||||||||||||||||||||||| targets:1038   GAGGGGCUACAAACAGUCUGGUU   1060 Target Full Sequence	0.0	Zea mays clone 323697 tyrosine specific protein phosphatase family protein mRNA, complete cds	NA	coding protein	psRNATarget
JB163883.1	ncRNA:23   CUCCCCGAUGUUUGUCAGACCAA   1   ||||||||=|||||||||||||| targets:112   GAGGGGCUGCAAACAGUCUGGUU   134 Target Full Sequence	1.0	Sequence 1547 from Patent EP2559767	NA	coding protein	psRNATarget
HI403422.1	ncRNA:23   CUCCCCGAUGUUUGUCAGACCAA   1   ||||||||=|||||||||||||| targets:112   GAGGGGCUGCAAACAGUCUGGUU   134 Target Full Sequence	1.0	Sequence 1547 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235552.1	ncRNA:23   CUCCCCGAUGUUUGUCAGACCAA   1   ||||||||=|||||||||||||| targets:112   GAGGGGCUGCAAACAGUCUGGUU   134 Target Full Sequence	1.0	Sequence 1547 from Patent EP2985353	NA	coding protein	psRNATarget
EZ073016.1	ncRNA:23   CUCCCCGAUGUUUGUCAGACCAA   1   ||||||||=|||||||*|||||| targets:49   GAGGGGCUGCAAACAGCCUGGUU   71 Target Full Sequence	2.5	TSA: Zea mays contig08653, mRNA sequence	NA	coding protein	psRNATarget
HI403343.1	ncRNA:23   CUCCCCGAUGUUUGUCAGACCAA   1   ||||||||=|||||||*|||||| targets:173   GAGGGGCUGCAAACAGCCUGGUU   195 Target Full Sequence	2.5	Sequence 1468 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235473.1	ncRNA:23   CUCCCCGAUGUUUGUCAGACCAA   1   ||||||||=|||||||*|||||| targets:173   GAGGGGCUGCAAACAGCCUGGUU   195 Target Full Sequence	2.5	Sequence 1468 from Patent EP2985353	NA	coding protein	psRNATarget
JB163804.1	ncRNA:23   CUCCCCGAUGUUUGUCAGACCAA   1   ||||||||=|||||||*|||||| targets:173   GAGGGGCUGCAAACAGCCUGGUU   195 Target Full Sequence	2.5	Sequence 1468 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020547635.1	ncRNA:23   CUCCCCGAUGUUUGUCAGACCAA   1   ||||||||=||||||*||||||| targets:2554   GAGGGGCUGCAAACACUCUGGUU   2576 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X7, mRNA	NA	coding protein	psRNATarget
AY111544.1	ncRNA:23   CUCCCCGAUGUUUGUCAGACCAA   1   ||||||||=||||||*||||||| targets:978   GAGGGGCUGCAAACACUCUGGUU   1000 Target Full Sequence	2.5	Zea mays CL947_1 mRNA sequence	NA	coding protein	psRNATarget
X55314.1	ncRNA:23   CUCCCCGAUGUUUGUCAGACCAA   1   ||||||||=||||||*||||||| targets:1022   GAGGGGCUGCAAACACUCUGGUU   1044 Target Full Sequence	2.5	Zea mays A2 gene	NA	coding protein	psRNATarget
XM_020547631.1	ncRNA:23   CUCCCCGAUGUUUGUCAGACCAA   1   ||||||||=||||||*||||||| targets:3454   GAGGGGCUGCAAACACUCUGGUU   3476 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020547630.1	ncRNA:23   CUCCCCGAUGUUUGUCAGACCAA   1   ||||||||=||||||*||||||| targets:3471   GAGGGGCUGCAAACACUCUGGUU   3493 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020547634.1	ncRNA:23   CUCCCCGAUGUUUGUCAGACCAA   1   ||||||||=||||||*||||||| targets:4329   GAGGGGCUGCAAACACUCUGGUU   4351 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_020547633.1	ncRNA:23   CUCCCCGAUGUUUGUCAGACCAA   1   ||||||||=||||||*||||||| targets:4332   GAGGGGCUGCAAACACUCUGGUU   4354 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020547632.1	ncRNA:23   CUCCCCGAUGUUUGUCAGACCAA   1   ||||||||=||||||*||||||| targets:4350   GAGGGGCUGCAAACACUCUGGUU   4372 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020547629.1	ncRNA:23   CUCCCCGAUGUUUGUCAGACCAA   1   ||||||||=||||||*||||||| targets:4352   GAGGGGCUGCAAACACUCUGGUU   4374 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008653247.2	ncRNA:23   CUCCCCGAUGUUUGUCAGACCAA   1   *|||||||=|||||||*|||||| targets:134   UAGGGGCUGCAAACAGCCUGGUU   156 Target Full Sequence	2.5	PREDICTED: Zea mays 50S ribosomal protein L18 (LOC103631773), mRNA	NA	coding protein	psRNATarget