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BaseInfo

ncRNA ID	novel_zma_miR12469
Species	Zea mays
Class	miRNA
Genome position	Chr3:100519441-100519496 [+]
Reference genome	RefGen_v4
Source	SRR5105961
Length	24
Mature sequence(if miRNA)	1 - GCACUCGGCAAAGAAGGAACACCU - 24
Stem-loop(if miRNA)	--                GAAC   U G   GCACUCGGCAAAGAAG    ACC G G   ||||||||||||||||    ||| |   CGUGAGCCGUUUCUUC    UGG C C AU                GAAA   C A
Stem-loop sequence	GCACUCGGCAAAGAAGGAACACCUGGGCACCGGUAAAGCUUCUUUGCCGAGUGCUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ087925.1	ncRNA:24   UCCACAAG-GAAGAAACGGCUCACG   1   =*|||||*-|||||||||||||||| targets:44   GAGUGUUGGCUUCUUUGCCGAGUGC   68 Target Full Sequence	3.0	TSA: Zea mays contig23571, mRNA sequence	NA	coding protein	psRNATarget
LQ239157.1	ncRNA:24   UCCACAAGGAAGAAACGGCUCACG   1   ||||*||**||||||||||||||| targets:46   AGGUCUUGGUUCUUUGCCGAGUGC   69 Target Full Sequence	2.0	Sequence 5152 from Patent EP2985353	NA	coding protein	psRNATarget
HI407027.1	ncRNA:24   UCCACAAGGAAGAAACGGCUCACG   1   ||||*||**||||||||||||||| targets:46   AGGUCUUGGUUCUUUGCCGAGUGC   69 Target Full Sequence	2.0	Sequence 5152 from Patent EP2074227	NA	coding protein	psRNATarget
JB167488.1	ncRNA:24   UCCACAAGGAAGAAACGGCUCACG   1   ||||*||**||||||||||||||| targets:46   AGGUCUUGGUUCUUUGCCGAGUGC   69 Target Full Sequence	2.0	Sequence 5152 from Patent EP2559767	NA	coding protein	psRNATarget
BT067215.1	ncRNA:24   UCCACAAG-GAAGAAACGGCUCACG   1   =*|||||*-|||||||||||||||| targets:1143   GAGUGUUGGCUUCUUUGCCGAGUGC   1167 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0310H18 mRNA, complete cds	NA	coding protein	psRNATarget
BT064046.1	ncRNA:24   UCCACAAG-GAAGAAACGGCUCACG   1   =*|||||*-|||||||||||||||| targets:1280   GAGUGUUGGCUUCUUUGCCGAGUGC   1304 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0133L10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175109.1	ncRNA:24   UCCACAAG-GAAGAAACGGCUCACG   1   =*|||||*-|||||||||||||||| targets:1280   GAGUGUUGGCUUCUUUGCCGAGUGC   1304 Target Full Sequence	3.0	Zea mays 1-aminocyclopropane-1-carboxylate oxidase2 (cl955_1), mRNA	NA	coding protein	psRNATarget
XM_008676330.2	ncRNA:24   UCCACAAGGAAGAAACGGCUCACG   1   =*||||*=*||||||||||||||| targets:1712   GAGUGUGUAUUCUUUGCCGAGUGC   1735 Target Full Sequence	3.0	PREDICTED: Zea mays amino-acid permease BAT1 homolog (LOC103650760), mRNA	NA	coding protein	psRNATarget
HI409785.1	ncRNA:24   UCCACAAGGAAGAAACGGCUCACG   1   |****||||*|||||||||||||| targets:9   AAAGAUUCCAUCUUUGCCGAGUGC   32 Target Full Sequence	1.0	Sequence 7910 from Patent EP2074227	NA	coding protein	psRNATarget
JB170246.1	ncRNA:24   UCCACAAGGAAGAAACGGCUCACG   1   |****||||*|||||||||||||| targets:9   AAAGAUUCCAUCUUUGCCGAGUGC   32 Target Full Sequence	1.0	Sequence 7910 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241915.1	ncRNA:24   UCCACAAGGAAGAAACGGCUCACG   1   |****||||*|||||||||||||| targets:9   AAAGAUUCCAUCUUUGCCGAGUGC   32 Target Full Sequence	1.0	Sequence 7910 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008654495.2	ncRNA:24   UCCACAAGGAAGAAACGGCUCACG   1   =|*****||||||||||||||||| targets:7   GGCAAAGCCUUCUUUGCCGAGUGC   30 Target Full Sequence	2.0	PREDICTED: Zea mays probable GMP synthase [glutamine-hydrolyzing] (LOC103632764), mRNA	NA	coding protein	psRNATarget
JB167233.1	ncRNA:24   UCCACAAGGAAGAAACGGCUCACG   1   =*||*|*|||||||||||||||*| targets:91   GAGUCUGCCUUCUUUGCCGAGUAC   114 Target Full Sequence	2.5	Sequence 4897 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238902.1	ncRNA:24   UCCACAAGGAAGAAACGGCUCACG   1   =*||*|*|||||||||||||||*| targets:91   GAGUCUGCCUUCUUUGCCGAGUAC   114 Target Full Sequence	2.5	Sequence 4897 from Patent EP2985353	NA	coding protein	psRNATarget
HI406772.1	ncRNA:24   UCCACAAGGAAGAAACGGCUCACG   1   =*||*|*|||||||||||||||*| targets:91   GAGUCUGCCUUCUUUGCCGAGUAC   114 Target Full Sequence	2.5	Sequence 4897 from Patent EP2074227	NA	coding protein	psRNATarget