Search result

BaseInfo

ncRNA ID novel_zma_miR12457
Species Zea mays
Class miRNA
Genome position Chr2:174493797-174493853 [-]
Reference genome RefGen_v4
Source SRR5105961
Length 24
Mature sequence(if miRNA) 1 - UGCCUUGGACAGUGCCUCGACGCC - 24
Stem-loop(if miRNA) --G       -    G    UU U   UCU
   GUCGGGG ACUG CCGA  G CGA   C
   ||||||| |||| ||||  | |||
   CAGCUCC UGAC GGUU  C GUU   C
CCG       G    A    -C -   UAU
Stem-loop sequence GGUCGGGGACUGGCCGAUUGUCGAUCUCCUAUUUGCCUUGGACAGUGCCUCGACGCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020552835.1
ncRNA:24   CCGCAGCUCCGUGACAGGUUCCGU   1
  |||**=|||||||||||||=||||
targets:437   GGCAAUGAGGCACUGUCCAGGGCA   460

2.5 PREDICTED: Zea mays Lipase-like PAD4 (LOC103654608), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008681455.2
ncRNA:24   CCGCAGCUCCGUGACAGGUUCCGU   1
  |||**=|||||||||||||=||||
targets:1764   GGCAAUGAGGCACUGUCCAGGGCA   1787

2.5 PREDICTED: Zea mays Lipase-like PAD4 (LOC103654608), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008681454.2
ncRNA:24   CCGCAGCUCCGUGACAGGUUCCGU   1
  |||**=|||||||||||||=||||
targets:1765   GGCAAUGAGGCACUGUCCAGGGCA   1788

2.5 PREDICTED: Zea mays Lipase-like PAD4 (LOC103654608), transcript variant X1, mRNA NA coding protein psRNATarget