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BaseInfo

ncRNA ID novel_zma_miR12453
Species Zea mays
Class miRNA
Genome position Chr1:209035878-209035943 [-]
Reference genome RefGen_v4
Source SRR1997865;SRR1997866;SRR2089708
Length 22
Mature sequence(if miRNA) 1 - UGAAAAAGGUGGGUGCGUUUGU - 22
Stem-loop(if miRNA) AAACUUAUCUAGCUCUUC   AAA      A      A
                  CAU   CACUUU UUCAUG G
                  |||   |||||| |||||| G
                  GUG   GUGGAA AAGUAC U
-----------UGUUUGC   --G      A      U
Stem-loop sequence AAACUUAUCUAGCUCUUCCAUAAACACUUUAUUCAUGAGGUUCAUGAAAAAGGUGGGUGCGUUUGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ241488.1
ncRNA:22   UGUUUGCGUGGGUGGAAAAAGU   1
  ||||||||||||=|||||||||
targets:128   ACAAACGCACCCGCCUUUUUCA   149

1.5 Sequence 7483 from Patent EP2985353 NA coding protein psRNATarget
JB169819.1
ncRNA:22   UGUUUGCGUGGGUGGAAAAAGU   1
  ||||||||||||=|||||||||
targets:128   ACAAACGCACCCGCCUUUUUCA   149

1.5 Sequence 7483 from Patent EP2559767 NA coding protein psRNATarget
HI409358.1
ncRNA:22   UGUUUGCGUGGGUGGAAAAAGU   1
  ||||||||||||=|||||||||
targets:128   ACAAACGCACCCGCCUUUUUCA   149

1.5 Sequence 7483 from Patent EP2074227 NA coding protein psRNATarget
XM_008682725.2
ncRNA:22   UGUUUG-CGUGGGUGGAAAAAGU   1
  =*||||-|||||||||||||||=
targets:216   GGAAACUGCACCCACCUUUUUCG   238

3.0 PREDICTED: Zea mays Nucleotide/sugar transporter family protein (LOC100191213), transcript variant X2, mRNA NA coding protein psRNATarget