Search result

BaseInfo

ncRNA ID	novel_zma_miR12445
Species	Zea mays
Class	miRNA
Genome position	Chr2:203555543-203555674 [+]
Reference genome	RefGen_v4
Source	SRR5105961;SRR5105963
Length	22
Mature sequence(if miRNA)	111 - UUGGAGUAGAACCGAACAAGCC - 132
Stem-loop(if miRNA)	--           -AU                   GA  A      UACGG   GAGAGAGAUUUUGA   CUUGUUCGGUU   UUUCAAUCUAUAUGGAUUG  GG GAUUGA     AUU              C   |||||||||||   |||||||||||||||||||  || ||||||     |||              U   GAACAAGCCAA   GAGGUUAGGUAUACCUAAC  CC CUAACU     CCC              U CC           GAU                   UC  -      ---CG   AAAGUUAGGGAUAA
Stem-loop sequence	CUUGUUCGGUUAUUUUCAAUCUAUAUGGAUUGGAGGAGAUUGAUACGGAUUGAGAGAGAUUUUGACUUAAUAGGGAUUGAAACCCGCUCAAUCCCCUCAAUCCAUAUGGAUUGGAGUAGAACCGAACAAGCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT064935.1	ncRNA:22   CCGAACAAGCCAAGAUGAGGUU   1   |||||||||||||||||||||| targets:748   GGCUUGUUCGGUUCUACUCCAA   769 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0035J15 mRNA, complete cds	NA	coding protein	psRNATarget
EZ061352.1	ncRNA:22   CCGAACAAGCCAAGAUGAGGUU   1   |||||||||||||||||*|||| targets:108   GGCUUGUUCGGUUCUACCCCAA   129 Target Full Sequence	1.5	TSA: Zea mays contig62474, mRNA sequence	NA	coding protein	psRNATarget
NM_001348011.1	ncRNA:22   CCGAACAAGCCAAGAUGAGGUU   1   |||||||||||||||||*|||| targets:355   GGCUUGUUCGGUUCUACCCCAA   376 Target Full Sequence	1.5	Zea mays hypothetical protein (LOC100277538), mRNA	NA	coding protein	psRNATarget
EU972046.1	ncRNA:22   CCGAACAAGCCAAGAUGAGGUU   1   |||||||||||||||||*|||| targets:694   GGCUUGUUCGGUUCUACCCCAA   715 Target Full Sequence	1.5	Zea mays clone 373861 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT062922.1	ncRNA:22   CCGAACAAGCCAAGAUGAGGUU   1   |||||||||||||||||*|||| targets:836   GGCUUGUUCGGUUCUACCCCAA   857 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0007N17 mRNA, complete cds	NA	coding protein	psRNATarget
EU959053.1	ncRNA:22   CCGAACAAGCCAAGAUGAGGUU   1   |||||||||||||||||*|||| targets:782   GGCUUGUUCGGUUCUACCCCAA   803 Target Full Sequence	1.5	Zea mays clone 209789 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
EU959258.1	ncRNA:22   CCGAACAAGCCAAGAUGAGGUU   1   |||||||||||||||||*|||| targets:782   GGCUUGUUCGGUUCUACCCCAA   803 Target Full Sequence	1.5	Zea mays clone 213262 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
EU959345.1	ncRNA:22   CCGAACAAGCCAAGAUGAGGUU   1   |||||||||||||||||*|||| targets:783   GGCUUGUUCGGUUCUACCCCAA   804 Target Full Sequence	1.5	Zea mays clone 217290 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
EU953075.1	ncRNA:22   CCGAACAAGCCAAGAUGAGGUU   1   |||||||||||||||||*|||| targets:919   GGCUUGUUCGGUUCUACCCCAA   940 Target Full Sequence	1.5	Zea mays clone 1380292 mRNA sequence	NA	coding protein	psRNATarget
EU961636.1	ncRNA:22   CCGAACAAGCCAAGAUGAGGUU   1   |||||||||||||||||*|||| targets:1039   GGCUUGUUCGGUUCUACCCCAA   1060 Target Full Sequence	1.5	Zea mays clone 237217 mRNA sequence	NA	coding protein	psRNATarget
XM_008666525.2	ncRNA:22   CCGAACAAGCCAAGAUGAGGUU   1   |||||||||||||||||*|||| targets:855   GGCUUGUUCGGUUCUACCCCAA   876 Target Full Sequence	1.5	PREDICTED: Zea mays mitochondrial import inner membrane translocase subunit TIM23-1 (LOC100282051), mRNA	NA	coding protein	psRNATarget
XM_008672211.2	ncRNA:22   CCGAACAAGCCAAGAUGAGGUU   1   |||||||||||||||||*|||| targets:881   GGCUUGUUCGGUUCUACCCCAA   902 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100277216 (LOC100277216), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020548987.1	ncRNA:22   CCGAACAAGCCAAGAUGAGGUU   1   |||||||||||||||||*|||| targets:1900   GGCUUGUUCGGUUCUACCCCAA   1921 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103648913 (LOC103648913), mRNA	NA	coding protein	psRNATarget
XM_008673290.2	ncRNA:22   CCGAACAAGCCAAGAUGAGGUU   1   |||||||||||||||||*|||| targets:1900   GGCUUGUUCGGUUCUACCCCAA   1921 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103648912 (LOC103648912), mRNA	NA	coding protein	psRNATarget
XM_008672210.2	ncRNA:22   CCGAACAAGCCAAGAUGAGGUU   1   |||||||||||||||||*|||| targets:1673   GGCUUGUUCGGUUCUACCCCAA   1694 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100277216 (LOC100277216), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT055069.1	ncRNA:22   CCGAACAAGCCAAGAUGAGGUU   1   |||||||||||||||||*|||| targets:887   GGCUUGUUCGGUUCUACCCCAA   908 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0132H13 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156482.1	ncRNA:22   CCGAACAAGCCAAGAUGAGGUU   1   |||||||||||||||||*|||= targets:799   GGCUUGUUCGGUUCUACCCCAG   820 Target Full Sequence	2.5	Zea mays threonine endopeptidase (LOC100283581), mRNA	NA	coding protein	psRNATarget
EU965203.1	ncRNA:22   CCGAACAAGCCAAGAUGAGGUU   1   |||||||||||||||||*|||= targets:799   GGCUUGUUCGGUUCUACCCCAG   820 Target Full Sequence	2.5	Zea mays clone 284456 threonine endopeptidase mRNA, complete cds	NA	coding protein	psRNATarget