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BaseInfo

ncRNA ID	novel_zma_miR12443
Species	Zea mays
Class	miRNA
Genome position	Chr2:184339115-184339224 [+]
Reference genome	RefGen_v4
Source	SRR5105961
Length	24
Mature sequence(if miRNA)	1 - AUCUACUACUACACAUUGUGUAAG - 24
Stem-loop(if miRNA)	AUC           --AU     AAGG   GCAGGUGAGCUUGGAGAGAGAUGUAG    UACUACUACAC    UGUGU    GUA                          U    |||||||||||    |||||    |||    AUGAUGAUGUG    ACGCA    UAC                          A --A           GUGU     CAAA   AGAUGUGGAUAUUGUCCUUUGUGUAG
Stem-loop sequence	AUCUACUACUACACAUUGUGUAAGGGUAGCAGGUGAGCUUGGAGAGAGAUGUAGUAGAUGUGUUUCCUGUUAUAGGUGUAGACAUAAACACGCAUGUGGUGUAGUAGUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU958969.1	ncRNA:24   GAAUGUGUUACACAUCAUCAUCUA   1   |||||||||||||||||||||||| targets:640   CUUACACAAUGUGUAGUAGUAGAU   663 Target Full Sequence	0.0	Zea mays clone 208531 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT054228.1	ncRNA:24   GAAUGUGUUACACAUCAUCAUCUA   1   |||=|||||||||||||||||||| targets:1143   CUUGCACAAUGUGUAGUAGUAGAU   1166 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0184O11 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152437.1	ncRNA:24   GAAUGUGUUACACAUCAUCAUCUA   1   |||=|||||||||||||||||||| targets:1143   CUUGCACAAUGUGUAGUAGUAGAU   1166 Target Full Sequence	0.0	Zea mays hypothetical protein (LOC100279428), mRNA	NA	coding protein	psRNATarget
BT065843.1	ncRNA:24   GAAUGUGUUACACAUCAUCAUCUA   1   |||=|||||||*|||||||||||| targets:424   CUUGCACAAUGCGUAGUAGUAGAU   447 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0135P02 mRNA, complete cds	NA	coding protein	psRNATarget
AY109359.1	ncRNA:24   GAAUGUGUUACACAUCAUCAUCUA   1   |||=|||||||*|||||||||||| targets:356   CUUGCACAAUGCGUAGUAGUAGAU   379 Target Full Sequence	1.5	Zea mays CL2022_2 mRNA sequence	NA	coding protein	psRNATarget
EU950507.1	ncRNA:24   GAAUGUGUUACACAUCAUCAUCUA   1   =||=|||||||||||||||||*|| targets:436   UUUGCACAAUGUGUAGUAGUAAAU   459 Target Full Sequence	1.5	Zea mays clone 495342 mRNA sequence	NA	coding protein	psRNATarget