A ncRNA database for oil producing plants

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BaseInfo

ncRNA ID	osa-miRf10841-npr
Species	Oryza sativa
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	20
Mature sequence(if miRNA)	NA - GGCUUAAGACGGCCACCAGC - NA
Stem-loop(if miRNA)	C CA A U GAUUUUUGCUGG GGUCGUCUUAAGCCAAC CCAGC AAAA C \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\| UUAAAAACGACC CCGGCAGAAUUCGGUUG GGUCG UUUU C A -C C A
Stem-loop sequence	GAUUUUUGCUGGCGGUCGUCUUAAGCCAACCACCAGCAAAAAUCCAUUUUCGCUGGCGUUGGCUUAAGACGGCCACCAGCAAAAAUU

Targets Info

Target Acc

Alignment

Exception

Target Description

Target Gene Name

Target Type

Method

HI404153.1

ncRNA:20	CGACCACCGGCAGAAUUCGG	1
	\|\|\|\|\|*\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:15	GCUGGCGGCCGUCUUAAGCC	34

1.0

Sequence 2278 from Patent EP2074227

coding protein

psRNATarget

JB164614.1

ncRNA:20	CGACCACCGGCAGAAUUCGG	1
	\|\|\|\|\|*\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:15	GCUGGCGGCCGUCUUAAGCC	34

1.0

Sequence 2278 from Patent EP2559767

coding protein

psRNATarget

LQ236283.1

ncRNA:20	CGACCACCGGCAGAAUUCGG	1
	\|\|\|\|\|*\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:15	GCUGGCGGCCGUCUUAAGCC	34

1.0

Sequence 2278 from Patent EP2985353

coding protein

psRNATarget

AK103787.1

ncRNA:20	CGACCACCGGCAGAAUUCGG	1
	\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:414	GCUUGUGGCCGCCUUAAGCC	433

2.5

Oryza sativa Japonica Group cDNA clone:J033145I17, full insert sequence

coding protein

psRNATarget

LQ236421.1

ncRNA:20	CGACCACCGGCAGAAUUCGG	1
	\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|*\|
targets:15	ACUGGAGGCCGUCUUAAGGC	34

2.5

Sequence 2416 from Patent EP2985353

coding protein

psRNATarget

JB164752.1

ncRNA:20	CGACCACCGGCAGAAUUCGG	1
	\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|*\|
targets:15	ACUGGAGGCCGUCUUAAGGC	34

2.5

Sequence 2416 from Patent EP2559767

coding protein

psRNATarget

HI404291.1

ncRNA:20	CGACCACCGGCAGAAUUCGG	1
	\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|*\|
targets:15	ACUGGAGGCCGUCUUAAGGC	34

2.5

Sequence 2416 from Patent EP2074227

coding protein

psRNATarget