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BaseInfo

ncRNA ID	novel_zma_miR12417
Species	Zea mays
Class	miRNA
Genome position	Chr1:286163038-286163094 [+]
Reference genome	RefGen_v4
Source	SRR5105961
Length	21
Mature sequence(if miRNA)	1 - UGCGCCAGAUCGCGGACCGUC - 21
Stem-loop(if miRNA)	--     C  AU       C    --       UGCGC AG  CGCGGAC GUCC  GGCCC   ||||| ||  ||||||| ||||  ||||C   ACGUG UC  GCGCCUG CAGG  CCGGU AG     -  -C       C    CG
Stem-loop sequence	UGCGCCAGAUCGCGGACCGUCCGGCCCCUGGCCGCGGACCGUCCGCGCCUGUGCAGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB170256.1	ncRNA:21   CUGCCAGGCGCUAGACCGCGU   1   ||||||||||||*|||||||| targets:45   GACGGUCCGCGACCUGGCGCA   65 Target Full Sequence	1.5	Sequence 7920 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241925.1	ncRNA:21   CUGCCAGGCGCUAGACCGCGU   1   ||||||||||||*|||||||| targets:45   GACGGUCCGCGACCUGGCGCA   65 Target Full Sequence	1.5	Sequence 7920 from Patent EP2985353	NA	coding protein	psRNATarget
HI409795.1	ncRNA:21   CUGCCAGGCGCUAGACCGCGU   1   ||||||||||||*|||||||| targets:45   GACGGUCCGCGACCUGGCGCA   65 Target Full Sequence	1.5	Sequence 7920 from Patent EP2074227	NA	coding protein	psRNATarget
EZ104830.1	ncRNA:21   CUGCCAGGCGCUAGACCGCGU   1   ||||||||||||*|||||||| targets:48   GACGGUCCGCGACCUGGCGCA   68 Target Full Sequence	1.5	TSA: Zea mays contig40487, mRNA sequence	NA	coding protein	psRNATarget
EZ099059.1	ncRNA:21   CUGCCAGGCGCUAGACCGCGU   1   ||||||||||||*|||||||| targets:33   GACGGUCCGCGACCUGGCGCA   53 Target Full Sequence	1.5	TSA: Zea mays contig34714, mRNA sequence	NA	coding protein	psRNATarget
EZ049111.1	ncRNA:21   CUGCCAGGCGCUAGACCGCGU   1   ||||||||||||*|||||||| targets:29   GACGGUCCGCGACCUGGCGCA   49 Target Full Sequence	1.5	TSA: Zea mays contig50229, mRNA sequence	NA	coding protein	psRNATarget
BT061906.1	ncRNA:21   CUGCCAGGCGCUAGACCGCGU   1   ||||||||||||*|||||||| targets:218   GACGGUCCGCGACCUGGCGCA   238 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0196M13 mRNA, complete cds	NA	coding protein	psRNATarget
BT034345.1	ncRNA:21   CUGCCAGGCGCUAGACCGCGU   1   ||||||||||||*|||||||| targets:690   GACGGUCCGCGACCUGGCGCA   710 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0009F02 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175289.1	ncRNA:21   CUGCCAGGCGCUAGACCGCGU   1   ||||||||||||*|||||||| targets:1686   GACGGUCCGCGACCUGGCGCA   1706 Target Full Sequence	1.5	Zea mays uncharacterized LOC100382557 (LOC100382557), mRNA	NA	coding protein	psRNATarget
BT064749.1	ncRNA:21   CUGCCAGGCGCUAGACCGCGU   1   ||||||||||||*|||||||| targets:1686   GACGGUCCGCGACCUGGCGCA   1706 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0101G18 mRNA, complete cds	NA	coding protein	psRNATarget
EU952231.1	ncRNA:21   CUGCCAGGCGCUAGACCGCGU   1   ||||||||||||*|||||||| targets:454   GACGGUCCGCGACCUGGCGCA   474 Target Full Sequence	1.5	Zea mays clone 1234152 mRNA sequence	NA	coding protein	psRNATarget
EU968855.1	ncRNA:21   CUGCCAGGCGCUAGACCGCGU   1   ||||||||||||*|||||||= targets:655   GACGGUCCGCGACCUGGCGCG   675 Target Full Sequence	2.5	Zea mays clone 324570 mRNA sequence	NA	coding protein	psRNATarget
EU971146.1	ncRNA:21   CUGCCAGGCGCUAGACCGCGU   1   ||||||||||||*|||||||* targets:354   GACGGUCCGCGACCUGGCGCC   374 Target Full Sequence	2.5	Zea mays clone 358377 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget